Sporosarcina thermotolerans: QNH10_06345
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Entry
QNH10_06345 CDS
T09050
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stho
Sporosarcina thermotolerans
Brite
KEGG Orthology (KO) [BR:
stho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stho03016
]
QNH10_06345
Enzymes [BR:
stho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QNH10_06345
Transfer RNA biogenesis [BR:
stho03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QNH10_06345
Prokaryotic type
tRNA splicing ligases
QNH10_06345
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
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Motif
Other DBs
NCBI-ProteinID:
WHT49236
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All DBs
Position
1119184..1120392
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AA seq
402 aa
AA seq
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MKKKIFGVHDDNTLRQFENCLRAGQVAGGVLCADGHYGYSQPVGGVIVYDGQISPSGVGY
DIACGNKAVRTNLKWSEIEKDLPRIMDEIASSISFGVGMKNMKRVDHKLFDDPDWDVFKE
IGKQEHDRLKKLAKDQLGTVGAGNHFVDVLVEKETGDVWIANHFGSRGFGHKTASGFLNL
ASGRGFSDRAPGESMEQAPTLIDLNSEMGDLYYRAMTLSGKYAYAGRNYVIDEVLSILGA
TSEFEVHNHHNYAWKETHFGKEYVVVRKGATPSAPGQLGFIGGSMGDVSVIVRGKGNEAN
ADSFFSTVHGAGRIMSRTEAAGRMNWKTRTRSGGKISQERMDQAVQKYGVELRGGGTDES
PFVYRKLRDVLDAHEETIDVLHILKPVGVCMAGANEYDPYKD
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaagatatttggtgtgcatgatgataatacattacgtcaattcgaaaattgt
ttacgggcaggacaggtagcaggcggtgtgctatgtgctgacggacattatggatacagt
cagccggttggcggcgttatagtgtatgacgggcaaatttcgccatcgggggtcggctat
gacatcgcttgcggaaataaggcggttcgcactaatctgaagtggtctgaaatcgaaaag
gatcttccccggattatggatgaaattgcttcatccatttctttcggtgttgggatgaaa
aatatgaaaagggtggatcataaactatttgatgatccggattgggacgtctttaaggaa
ataggtaagcaggagcatgatcggctgaagaaattggcaaaagatcaattggggacagtt
ggcgccgggaatcattttgttgatgtactagtggagaaagaaacaggtgatgtgtggatc
gccaatcattttgggagcaggggattcggccataagacggcgagcggattcttgaacttg
gcgagtggtaggggattttcagaccgggcacctggtgaaagcatggagcaagcgccgaca
ttaattgatttgaacagcgaaatgggcgatctttattatcgtgcgatgacgttaagtggg
aaatatgcatatgccggaaggaattacgtaatcgatgaagttctctcgattttaggcgcg
acttccgaatttgaggtgcataatcatcataattacgcttggaaagagactcatttcggc
aaggaatacgtcgttgtccgtaaaggggcgactccttcagcaccagggcaattaggcttc
atcggtggcagtatgggtgatgtttctgtaatcgtccgtggaaaagggaacgaagcaaat
gcagattcattttttagcacagtccatggagctggccgaatcatgagtcgaacagaagcg
gcgggccggatgaactggaaaacccgaacacggtccggtgggaaaatttcacaagaacgt
atggatcaagccgttcaaaagtacggcgtcgaattgcgtggcggagggacagatgaaagt
ccgtttgtctatcgcaaattgcgtgatgtgttagatgcacatgaagagacgattgatgtc
ctccatatattgaaaccagtcggagtttgcatggctggtgcgaatgaatatgatccgtat
aaggattga
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