Sporosarcina thermotolerans: QNH10_16560
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Entry
QNH10_16560 CDS
T09050
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
stho
Sporosarcina thermotolerans
Pathway
stho03030
DNA replication
stho03410
Base excision repair
stho03420
Nucleotide excision repair
stho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNH10_16560 (polA)
03410 Base excision repair
QNH10_16560 (polA)
03420 Nucleotide excision repair
QNH10_16560 (polA)
03440 Homologous recombination
QNH10_16560 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stho03032
]
QNH10_16560 (polA)
03400 DNA repair and recombination proteins [BR:
stho03400
]
QNH10_16560 (polA)
Enzymes [BR:
stho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QNH10_16560 (polA)
DNA replication proteins [BR:
stho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNH10_16560 (polA)
DNA repair and recombination proteins [BR:
stho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
QNH10_16560 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNH10_16560 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
WHT47717
LinkDB
All DBs
Position
complement(2923066..2925690)
Genome browser
AA seq
874 aa
AA seq
DB search
MSKEKIVLLDGNSLAYRAFFALPLLTNDTGIHTNAIYGFTMMLQNILKEEKPTHILVAWD
AGKTTFRHSTFSEYKGGRQKTPPELSEQFPYLRKLLDAFQIPQYELDQYEADDIIGTLSK
TGDAEGMEVIVISGDKDLTQLASDNTTVCITRKGITDLEKYTPAHVMDKYGLSPLQIIDM
KGLMGDPSDNIPGVPGVGEKTAIKLLKEYGSVEKVYESLDKVSGKKLKENLTENEEKAFM
SKRLATIEVNAPITISIKNLDYPGPDEENVKALYEELQFKTLLEKMAPQTESEPIKEINV
HIVTDPDTIELADEMALHVEMIDENYLASEISGIGMTDGETIIFIPFEVVIKSDKLKKWF
QDEQKRKFATDSKASYASLLRHGIEVNGFEFDLLLATYIANPSSSYTDVASVAKEFNYFD
IQSDEVVYGKGAKKALPGEETLADHAGRKAQAVWKLKPILEDKLRDNEQFELYRELEMPL
AKILGKVETTGVKTDLGILRQIGIDLSARLLELESIIYEMAGQKFNINSPKQLGEILFEK
IGLTPIKKTKTGYSTAADVLEKLESEHEIIGFILTYRQLGKLNSTYIEGLTKEIHEDGKI
HTRFQQALTQTGRLSSINPNLQNIPIRLEEGRKIRAAFVPSEPGWLMFAADYSQIELRVL
AHMSQDEKMIAAFQEGEDIHTKTAMDVFGVDKDGVSSDMRRTAKAVNFGIVYGISDYGLS
QSLNITRKEAGKFIDTYLETFPGVKQYMEDIVADAKMKGYVVTMMNRRRYLPDITSSNFN
LRSFAERTAMNTPIQGTAADIIKKAMIDMDARLKEEGLQTRMLLQVHDELIFEAPEDEIE
KLKEIVPEVMEFALTLDVPLKVEWAYGLSWYETK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaagagaaaattgtacttttggatgggaacagcttggcgtatcgagcatttttt
gccctaccgttattaacgaacgacacaggaatccatacgaacgctatctatggatttaca
atgatgctacaaaacatcctaaaagaggaaaagccaacacatatactcgtcgcttgggat
gcaggtaaaacaacattcaggcattcaacattcagcgaatacaaaggtggacgccaaaaa
acaccaccggaactttctgagcaattcccgtatttacggaaattacttgatgcattccaa
atcccacaatacgaactcgatcagtacgaagccgatgacattattggaacattgagcaaa
actggggacgcggaaggcatggaagtcatcgtcatttctggtgataaagacttgactcaa
cttgcaagcgacaatacaacagtttgtattacacgaaaaggtataacagatcttgagaaa
tacacacctgcacatgtgatggacaagtacggactttcaccattacaaatcattgatatg
aaaggccttatgggagacccttcagacaatattcctggtgtgcctggagttggagaaaaa
actgccattaaactattgaaggaatacggttcagtcgagaaagtttacgaatcattggat
aaggtttctggtaaaaaactgaaagagaatttgactgagaatgaagaaaaagcattcatg
agcaaaagactcgctacgattgaagtgaatgcacccattaccatttcgattaagaatttg
gattatcctggacctgacgaggaaaacgtaaaagcactttatgaagaattgcagtttaaa
acgctgcttgaaaaaatggctccacaaactgaaagtgaaccgattaaggaaatcaacgtt
catatcgtaactgatccggataccattgaacttgcagacgaaatggcacttcatgttgaa
atgatcgatgagaattatttagcctctgaaatttcaggcatcggtatgaccgacggtgaa
accatcatctttattccgtttgaagtcgtcattaagtcggataagttgaaaaaatggttc
caggacgaacaaaagagaaagttcgcaactgattcaaaagcatcatatgcatctttgcta
agacatggtatcgaagtgaatggttttgaatttgatttattattggcgacctatattgca
aacccttcttccagttacacagatgttgcatctgttgccaaagaattcaactacttcgat
atccaatcagacgaggttgtttatggaaaaggtgccaaaaaggcattaccgggagaagaa
acacttgcagatcacgccggaaggaaagcccaagctgtctggaaactgaagccgatactg
gaagacaagcttcgtgataatgagcaatttgagttgtaccgtgagcttgaaatgccatta
gctaaaatccttgggaaggtggaaacaacgggagtcaagactgacttaggcatcctgcgt
caaatcggaattgatttatctgcgaggcttttagagttggaatcgatcatctatgaaatg
gcgggacaaaaattcaatattaattcgcccaagcaacttggtgaaattctgttcgaaaaa
atcggtctgacaccaattaagaaaacaaagacgggatattctactgctgctgatgtattg
gagaaacttgaaagcgaacacgaaattatcggtttcatcttgacgtacagacagcttgga
aagctgaattcaacttatattgaaggactaactaaggaaatccacgaagatggtaaaatt
catactcgttttcaacaagccttaacccaaacaggtcgtttgagctcgattaatccaaat
ctgcaaaacatcccaatccgtttggaggaaggcaggaaaatacgagcagcatttgttcca
tccgaaccaggctggctaatgtttgcagcggattattcgcaaattgaactgcgtgtcctt
gcccatatgtctcaagacgaaaaaatgatagcagctttccaagaaggcgaggatattcat
acaaaaacagcgatggatgtgttcggcgtagataaggatggagtttcctcagatatgaga
cggactgctaaggcggtcaacttcggcattgtctatggcatcagtgactatggcctttct
caaagtttgaatataacccgtaaagaagcagggaaattcatcgatacgtatttggagacg
ttccctggagttaaacaatatatggaagatattgttgcagatgcgaaaatgaaaggttat
gtcgttacaatgatgaatagaagacgctatttacctgacataacaagttctaattttaat
ctaagaagttttgcagaaagaacggcgatgaatacgccaatccaaggaacagccgcagac
atcatcaaaaaagcgatgattgacatggatgcaagattgaaagaagaaggccttcaaaca
aggatgcttcttcaagtacatgatgaattgatttttgaagcaccagaagatgaaatagag
aaattaaaggaaattgtacctgaagtgatggaattcgcgttaacacttgatgttcctttg
aaagtcgagtgggcgtatggactatcctggtatgaaacgaagtga
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