Streptomyces sp. HP-A2021: MQE23_18170
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Entry
MQE23_18170 CDS
T11535
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sthp Streptomyces sp. HP-A2021
Pathway
sthp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sthp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MQE23_18170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sthp03021
]
MQE23_18170 (rpoB)
03400 DNA repair and recombination proteins [BR:
sthp03400
]
MQE23_18170 (rpoB)
Enzymes [BR:
sthp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MQE23_18170 (rpoB)
Transcription machinery [BR:
sthp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MQE23_18170 (rpoB)
DNA repair and recombination proteins [BR:
sthp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MQE23_18170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UOB10882
LinkDB
All DBs
Position
complement(4031118..4034603)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNAASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEE
ALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGTDTPLDAGILTVEDIIATIKYLVKLHAGETETVGDNGTSVVVETDDIDHFG
NRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLATYGRVNAFGFVETPYRKVFEGQVTDQVDYLTADEEDRFVIAQANAPLTDDLRF
AEARVLVRRKGGEVDYVGPEDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIQAESPLVGTGMEYRSAVDAGDVVKAEKAGVVQEVSADYITTANDDGTYITYRLAK
FARSNQGTSVNQKVIVAEGDRIIEGQVLADGPATQRGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVIAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWDVSGLADEWAQRLQAIDADQVPPRTNVATP
VFDGAREDELAGLLEHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacgccgccagcactgccccg
ctgcgcatctcttttgcaaagatcaaggagcctctcgaggttccgaacctgctcgcgctg
cagaccgagagcttcgactggctgctcggcaacaccgcctggcagagtcgggtcgaggag
gctctcgagaacggtcaggacgtccccaccaagtccgggctcgaggagatcttcgaggag
atctccccgatcgaggacttcagcgggtcgatgtcgctgaccttccgcgaccaccgcttc
gagccgccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggtgagatcaagtctcagacggtc
ttcatgggcgacttcccgctcatgacgaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctcgtccgttcgcccggcgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgcgaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgtcctgctcaaggcgctcggctggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgcccgggcgagccccccacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaaccccaagcgctacgacctggccaaggtcggc
cgttacaaggtcaacaagaagctgggtacggacaccccgctggacgccgggatcctgacc
gtcgaggacatcatcgcgacgatcaagtacctggtgaagctgcacgccggcgagaccgag
acggtcggtgacaacggcacgtccgtggtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgcctgcgcagcgtcggcgagctcatccagaaccaggtccgtacgggtctggcg
cgtatggagcgtgtcgtccgcgagcggatgacgacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaacaacccgctgtcgggtctgacgcacaagcggcgt
ctttccgcgctcggcccgggtggtctgtcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgatcgagacccctgaaggcccgaacatc
ggtctgatcggctcgctcgccacctatggtcgtgtgaacgcgttcggtttcgtcgagacc
ccgtaccgcaaggtgttcgagggccaggtcaccgaccaggtcgactacctcacggccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgcgccgctgacggacgacctccgcttc
gccgaggcccgcgtgctggtccgccgtaagggcggcgaggtcgactacgtcggccccgag
gacgtggactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
cccttcctggagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgccag
gccgttccgctgatccaggcggagtccccgctcgtcggcaccggcatggagtaccgctcc
gcggtcgacgccggcgacgtggtcaaggccgagaaggccggtgtggtccaggaggtctcc
gcggactacatcaccaccgccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcatcgtggccgagggcgac
cggatcatcgagggccaggtcctcgccgacggtccggccacccagcggggcgagatggcg
ctgggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcatcgccggtgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acgcccgaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggtgtgcgcgtcttcgac
cgcgaggagggcgacgagcttccccccggtgtgaaccagctggtgcgcgtctacgtcgcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctcgaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctcggtgtcccgtcccgaatgaacccgggacaggtgctggagatc
cacctcggctggctcgccagccagggctgggacgtctccggtctcgccgacgagtgggcg
cagcgtctccaggccatcgacgccgaccaggtcccgccgcggaccaacgtcgcgacgccg
gtcttcgacggtgcccgcgaggacgagctggccggtctgctggagcacaccatcccgaac
cgcgacggcgagcgcatggtgctcccgtccggcaaggcgcggctgttcgacggccgctcc
ggtgagccgttcccggagccgatctcggtcggctacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctgcacgcccgttcgaccggcccctactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctggaggcttacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtctctctgcctgaacgtg
gaggtgctgtccagcgacggtatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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