Streptomyces sp. HU2014: M1P56_00510
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Entry
M1P56_00510 CDS
T11358
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sthu Streptomyces sp. HU2014
Brite
KEGG Orthology (KO) [BR:
sthu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sthu03016
]
M1P56_00510
Enzymes [BR:
sthu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
M1P56_00510
Transfer RNA biogenesis [BR:
sthu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
M1P56_00510
Prokaryotic type
tRNA splicing ligases
M1P56_00510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
T6SS_Vgr
Motif
Other DBs
NCBI-ProteinID:
UQI42972
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All DBs
Position
119832..121025
Genome browser
AA seq
397 aa
AA seq
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MSYTEVPGARVPIRMWADPATVEGVAMQQLRNVSTLPWIQGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTAEDLPADLSRLRSRIEQAIPVGRGMHDSAVDPG
KLHGLATSGWDDFWGRFDGVADAVKFRQERATKQMGTLGSGNHFWELCLDSDDSVWIMLH
SGSRNIGKELADYHIGQAQKLPHNQGLIDRDLAVFIADTPQMAAYRHDLFWAQEYAKHNR
EIMMALSQEVLRREFAKAKVTFGDVISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRNAAKKRFTTRDLEEQTRGVECRKDAG
VVDEIPGAYKPIEKVMEQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaccgaggtgcccggcgcccgggttccgatccgcatgtgggccgacccggcc
acggtcgagggcgtcgccatgcagcagctgcgcaacgtctcgaccctgccgtggatccag
ggcctcgcggtgatgcccgacgtccacttcggcaagggcgccacggtcggctcggtgatc
gcgatgcgtggcgcggtgtgcccggcggcggtcggggtggacatcggctgcgggatgtcg
gcggtgaagacctcgctgaccgcggaggacctgcccgccgacctgtcgcggctgcgctcc
cggatcgagcaggcgatcccggtgggccgcgggatgcacgactccgcggtggacccgggc
aagctgcacgggctggcgacgtcggggtgggacgacttctgggggcggttcgacggggtc
gcggatgcggtcaagttccgtcaggagcgcgccacgaagcagatgggaacgctcggatcc
ggaaaccatttctgggaactctgcctggattctgatgactctgtctggatcatgctgcac
tccggttcccggaacatcggcaaggaactcgccgattaccacatcgggcaggcccagaaa
ctgccgcacaaccagggcctgatcgaccgtgacctcgcggtcttcatcgcggacaccccg
cagatggcggcctaccggcacgacctcttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggcgctctcccaggaagtgctgcgccgggagttcgcgaaggccaaggtc
acctttggcgacgtgatctcctgccaccacaactacgtggccgaggagcgctacgagggc
atggacctgctcgtcacgcgcaagggcgcgatccgcgccggcagcggcgagttcggcatc
atcccgggctcgatgggcaccggctcgtacatcgtgaagggcctcggcaacgcggcctcc
ttcaactccgcgtcccacggcgcgggccgcaagatgagccgcaacgccgcgaagaagcgc
ttcaccacgcgggacctggaggagcagacacgcggtgtggagtgtcgtaaggacgccggt
gtggtcgacgagatccccggggcgtacaagccgatcgagaaggtcatggagcagcagcgc
gacctcgtcgaggtcgtcgcgaagctgaagcaggtcgtctgcgtcaagggctga
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