Streptomyces sp. HU2014: M1P56_04675
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Entry
M1P56_04675 CDS
T11358
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sthu Streptomyces sp. HU2014
Pathway
sthu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sthu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1P56_04675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sthu03019
]
M1P56_04675
03009 Ribosome biogenesis [BR:
sthu03009
]
M1P56_04675
Enzymes [BR:
sthu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M1P56_04675
Messenger RNA biogenesis [BR:
sthu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M1P56_04675
Ribosome biogenesis [BR:
sthu03009
]
Prokaryotic type
rRNA processing factors
M1P56_04675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UQI43700
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All DBs
Position
1095454..1099416
Genome browser
AA seq
1320 aa
AA seq
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MLEPTEPTNNPDSGPGDTLPPRRRRRAASRPAGPPSAGTEAAVTVETTAPASTEAPAAAP
AEETPAAAEAPATPARPRRRATRKATAPAGAPRKGEQAAEAPAEAVAEPAPEAAEAAEPA
AEAKPARTRRRAVRKATAPAGAPQAAETAPAAPEAPAVAEEPAAEEAPAEAPVETPAAAP
ARTRRRAVRKATAPAGAPQAAETVVEPVAEPAPAVTEAPEEAVAEAAETPEAKPARTRRR
AVRKATAPAGAPQAAEAEAVAEEPEAAAPVAEEAPAAEPRGRRTRRRATGGDAEQPAEAA
EAPAKGRTRRRVAAGDAEAAAAALEAAKEASRARGPVVSEAEAAPAEETAAPARGRRRAV
RPPTAVFQAPVFTEPMFQTPETAAAAAAAGPVEEEPEEEAAEPVAEQAQPAGRRRRRRRG
EPAEAAEQAVAAPAVQQDEEGEEAEGAEETEAAQEDEGDRPSRRRRRGGRRRRRGESGDA
EGELSEDEQQEAEQDEAAEEEQEEALDEESGAGSASSRRRRRRRRRSGDGAEAETGSDDP
ERTVVKVREPRKREEREPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEF
LARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSME
AAFVDIGKGRNAVLYAGEVNFEALGMGNGPRRIETALKSGQSVLVQVTKDPIGHKGARLT
SQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEDE
LARDVQRLQAQWEEIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDTAWET
IHGYVSHVAPDLTDRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMV
VVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLEANRDLV
LRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEPCVHCNGRGVIVHMDQP
TTVGGGGGGKRGKKKGKAAPAHEHDHEHVTETAEAVESAEEAEAPELEPVAVAEADLQPS
VGGDEEWFGSPAEAESAAKRGGRTRRRATRKATAPAGAPRAEREPETVVAPAAPVAEAEP
EPRAAEPEAVPVAEPVAEAAVEAPAAPVAAEEPAPAAPARTRRRATRRVSAPAGSPADAE
AAVVVVESAARPEAEEAPAEPTTAEEVTEAVVELVEQAEAAEAAEEAAPAKKTARKTAAK
TAKKAPAKKAAAKKTAAKKTTAKKTTTAKKAATKTAAKKAPAKRATKKTAEAAAASSSED
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacccactgagcccaccaacaaccccgacagcggacccggcgacacactgccg
ccgcgtcgccgccgccgtgcggcgtcccgccccgccggcccgccgtcggcgggtaccgag
gccgccgtgacggtcgagacgaccgcccccgcgagcacggaggcgcccgcagccgccccc
gccgaggagaccccggccgccgccgaggcgccggccaccccggcccgcccgcgccgccgc
gcgacccgtaaggccaccgccccggccggcgctccccgtaagggtgagcaggccgccgag
gcgcccgccgaggccgtcgccgagcccgcccccgaggccgctgaggccgccgagcccgcc
gccgaggccaagccggcccgtacgcgccgtcgcgccgtgcgcaaggccaccgctccggca
ggtgccccgcaggccgccgagaccgctccggccgcgccggaggccccggccgtcgccgag
gagcccgccgccgaggaggccccggccgaggccccggtcgagaccccggccgccgccccc
gcccgtacccgccgtcgcgccgtccgtaaggccacggccccggccggtgccccgcaggcc
gccgagacggtcgtcgagcccgtggccgagccggccccggccgtgaccgaggcgcccgaa
gaggccgtcgccgaggccgccgagacccctgaggccaagccggcccgtacgcgccgtcgt
gccgtccgtaaggccaccgctccggccggtgccccgcaggccgccgaggccgaggccgtc
gccgaggagcccgaggccgccgctccggtggcggaggaggcccccgccgccgagccgcgt
ggccgccgtacccgccgccgggccaccggtggcgacgccgagcagcccgccgaggccgcc
gaggccccggccaagggccgtacgcgccgccgtgtcgccgccggtgacgccgaggccgcc
gccgccgcgctggaggccgccaaggaggcgagccgcgcccgtggccccgtggtgagcgag
gccgaggccgcgcccgccgaggagaccgccgctcccgcgcgcggccgccgccgcgccgtg
cgcccgccgaccgccgtcttccaggcgccggtcttcaccgagccgatgttccagacgccg
gagaccgccgccgctgccgccgccgcgggcccggtcgaggaggagcccgaggaggaggcg
gccgagcccgtcgccgagcaggcgcagcccgccggccgtcgtcgccggcgccgccgtggc
gagcccgccgaggccgccgagcaggccgtcgccgcccccgccgtccagcaggacgaggag
ggcgaggaggccgagggcgccgaggagaccgaggccgcgcaggaggacgagggcgaccgc
ccgtcgcgccgccgccgtcgcggtggccgtcgccgtcgccgcggtgagtccggtgacgcc
gagggtgagctgtccgaggacgagcagcaggaagccgagcaggacgaggccgccgaggag
gagcaggaggaggcgctggacgaggagtccggcgcgggttccgccagcagccgccggcgt
cgccgtcgccgtcgccgcagtggtgacggcgccgaggccgagaccggcagcgacgacccg
gagcggaccgtcgtcaaggtccgcgagccccgcaagcgcgaggagcgcgagccgggcacg
ggcttcgacgaggtgcagtccatcaagggctcgacccgcatggaggcgaagaagcagcgc
cgccgtgagggccgcgagcagggccgccgccgcgtgccgatcatcacggaggccgagttc
ctggcccgccgtgaggccgtcgagcgtgtgatggtcgtccggcagagcggtgagcgcacc
cagatcggcgtgctggaggacaacgtcctcgtcgagcactacgtcaacaaggagcaggcc
accagctacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggag
gccgccttcgtcgacatcggcaagggccgcaacgcggtcctgtacgccggtgaggtcaac
ttcgaggcgctcggcatgggcaacggcccgcgccgcatcgagaccgcgctgaagtccggc
cagtccgtgctcgtgcaggtcaccaaggacccgatcggtcacaagggcgcccgcctgacc
agccaggtctcgctgcccggccgctacctggtctacgtgcccgagggctcgatgaccggt
atcagccggaagctgcccgacaccgagcgcgcccgtctgaagcagatcctcaagaagatc
gtccccgaggacgcgggcgtcatcgtccgtaccgccgcggagggcgcgagcgaggacgag
ctggcccgtgacgtgcagcgtctccaggcgcagtgggaagagatccagaagaaggcgaag
agcggcaacgccccgaccctgctgtacggcgagccggacatgaccgtccgcgtcgtgcgc
gacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacaccgcgtgggagacc
atccacggctacgtctcgcacgtcgccccggacctcacggaccggctccagaagtggacg
tcggacgtcgacgtcttcgccacgtaccggatcgacgagcagctgatgaaggcgctggac
cgcaaggtctggctgccgagcggcggctcgctggtgatcgaccggaccgaggcgatggtc
gtcgtcgacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtc
accaagaacaacctcgaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacctc
ggtggcatcgtggtgatcgacttcatcgacatggtgctggaggccaaccgcgacctcgtg
ctgcggcgcctgctggagtgcctgggccgggaccgtacgaagcaccaggtcgccgaggtg
acctcgctgggtctggtccagatgacccgtaagcgggtcggtcagggcctgctggagtcc
ttctccgagccctgcgtgcactgcaacggccgcggcgtgatcgtccacatggaccagccg
acgaccgtcggtggcggcggtggcggcaagcgcggcaagaagaagggcaaggccgctccg
gcgcacgagcacgaccacgagcacgtgacggagacggcggaggccgtggagtccgcggag
gaggccgaggcccccgagctggagcccgtcgcggtcgccgaggccgacctccagccgtcg
gtcggcggtgacgaggagtggttcggcagcccggccgaggcggagagcgccgcgaagcgc
ggtggccgtacgcgtcgtcgtgcgacccgtaaggcgacggccccggccggtgccccgcgg
gcggagcgcgagccggagaccgtcgtggccccggccgcgccggtggccgaggccgagccg
gagccgcgcgccgcggagccggaggccgtccccgtggccgagcccgtggccgaggcggct
gtcgaggctccggccgcgccggtggccgcggaggagccggctccggccgctccggcccgt
acccgccgccgggccacccgccgggtctccgcgcccgcgggttcgccggcggacgccgag
gccgccgtggtggtcgtggagtccgcggcccgtccggaggccgaggaggccccggcggag
cccacgacggccgaggaggtcaccgaggcggtcgtggagctggtcgagcaggcggaggcc
gccgaggccgccgaggaggccgcgccggccaagaagaccgcgcgcaagacggccgccaag
accgccaagaaggccccggcgaagaaggccgccgccaagaagacggccgcgaagaagacg
acggccaagaagacgacgaccgcgaagaaggccgccaccaagacggcggccaagaaggct
ccggccaagcgggcgacgaagaagaccgcggaagcggccgccgcgtcctcctcggaggac
tga
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