Sphaerobacter thermophilus: Sthe_1003
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Entry
Sthe_1003 CDS
T01128
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sti
Sphaerobacter thermophilus
Pathway
sti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sthe_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sti03021
]
Sthe_1003
03019 Messenger RNA biogenesis [BR:
sti03019
]
Sthe_1003
Transcription machinery [BR:
sti03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Sthe_1003
Messenger RNA biogenesis [BR:
sti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sthe_1003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ACZ38439
UniProt:
D1C2H2
LinkDB
All DBs
Position
1:1112449..1113702
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AA seq
417 aa
AA seq
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MTVTINELESKTIDELHELARELEITGFSRMKKQELISRVLQAQTEQQGNIYGEGVLDII
EDGFGFLRGERYLPGPNDIYVSQSQIRRFGLRTGDWVSGHVRPPKENEKYYSLLRVEAVN
GMDPETARRRPNFDSLTPIFPLELINLETSPNILSTRLLNLVAPIGRGQRGLIVSPPKAG
KTILLKAIANGITTNYEDIHLIVCLIGERPEEVTDMKRSVDGEVISSTFDEPVEDHTKVA
EMVLERAKRLVESGRDVVILLDSITRLARAYNLAVPPSGRTLSGGIDPVALYPPKRFFGA
ARNIEGGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRIYPAIDIQRS
GTRREELLLDEQTLRQVWTMRRMVSMLGGTEGTELVLGRLAKTANNAEFLATLTKDL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtaaccatcaacgaacttgagtcaaaaacaatcgatgagctgcatgagctcgcg
cgcgaattggagatcaccggcttctctcgcatgaagaagcaggaactgatcagccgcgtg
ctccaggcgcagaccgagcagcaggggaacatctacggcgagggcgtgctcgacatcatc
gaggacggcttcggtttccttcgcggggagcgctacctccctggccccaatgacatctac
gtgtcgcagtcgcagatccgccgcttcggactgcgcacgggtgactgggtttcggggcac
gtgcgaccgccgaaggagaacgagaaatactacagcctgctgcgggtcgaagccgtcaac
ggcatggacccggagacagcgcgacgaaggccgaacttcgacagcctgaccccgatcttc
cccctcgagctgatcaacctcgaaacctcgcccaacatcctctcgacccgattgctcaat
ctcgtcgccccgatcgggcgcggtcagcgcgggttgatcgtgtcgccgccgaaggccggt
aagacgatcttgctcaaggcgatcgccaacggcatcaccaccaactacgaagatatccac
ttgatcgtctgtctcatcggcgagcgacccgaagaggtgaccgacatgaagcggtcggtc
gacggcgaggtgatcagctcgaccttcgatgagccggtggaggaccacaccaaggttgcg
gagatggtcctcgagcgcgccaagcggcttgtggagtcgggtcgcgacgtggtcatcctg
ctggactcgatcacgcgcctggcccgggcttacaacctggcggtgccgccgagcggccgc
acgctctccggcggtatcgacccggtggcgctgtatccgcccaagcgcttcttcggcgca
gcccgcaatatcgaggggggcggcagcctgacgatcatcgcgacgtgtctcatcgacacc
ggttcccgcatggacgacgtcatctacgaggagttcaagggaaccggtaacatggagttg
cacctggaccgcaagctggcggagcgccgcatctaccccgcgatcgacatccagcggtcg
ggtacccggcgcgaagagctgctcctcgacgagcagacgctgcgtcaggtgtggacgatg
cgccgcatggtgtcgatgctcggcgggaccgaaggcaccgagctggtgctgggtcggctg
gccaagacggccaacaacgccgagttcctggcgacgctcaccaaggatctctag
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