Sphaerobacter thermophilus: Sthe_1030
Help
Entry
Sthe_1030 CDS
T01128
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sti
Sphaerobacter thermophilus
Pathway
sti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sthe_1030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sti03021
]
Sthe_1030
03400 DNA repair and recombination proteins [BR:
sti03400
]
Sthe_1030
Enzymes [BR:
sti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sthe_1030
Transcription machinery [BR:
sti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sthe_1030
DNA repair and recombination proteins [BR:
sti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sthe_1030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
ToMV_Hel_N
Motif
Other DBs
NCBI-ProteinID:
ACZ38466
UniProt:
D1C2J9
LinkDB
All DBs
Position
1:1140888..1145327
Genome browser
AA seq
1479 aa
AA seq
DB search
MQTMSIGRRSRDSHQGLDVNDFDAIRISLASPEAIRSWSHGEVTKPETINYRTLRPEHGG
LFCERIFGPTRDFECYCGKYKRVRHAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIW
YVKGTPSRLGLLLDISPRNLERVLYFASYLVTEVDEEKREALIREIYEELEAELAELDRE
LEARTADITSAIEAELSHLRAGAESLGQSVEQRLAEQKAELDQEATAVRERLESLLGEAA
PEEIVFRGRTIVREGEAVNEDRLQALSEAVNEEREELERQAEHDVTSGQALAEAEQDQLR
YDADEKTRQIVQEYEQQKQALRAEAEAMVRAISDLKPLQVLTETQYREAMELAPGVFKAG
MGAEAVYEVVSKMDLDKLSAELRQEIHSVSGQRRKKAAKRLRVVEALRKSGNRPEWMIFT
VLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQ
EAVDALIDNGRRGRVVSGSGKHKLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPD
LKLHQCGLPKRMALELFKPFVMQKLVAQGYAHNIKAAKRLVERVDPHVWDVLEQVIADYL
VLLNRAPTLHRLGIQAFEVKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSAAAQQEA
RERMLSTRNLLDPSDGDPVITPTQDIVLGCYYMTLPRPGARGEGKVFAGPHEVELAYRTG
VVDLQAQIKVRLELNGSGPQLVDTTVGRVLLNEVIPDELGFWNETMDRKALRRLVAACYR
ELGPEVTAEMADNIKTIGFNYATKGGLTIGLTDVHIPESKEAIIAAADAKVEEVERQYRR
GLITDAERHREVVNIWNDARDELAKAVEAGLGVNNALYMMSTSGAKGNINQISQMAGMRG
LMLDPGGKIIDLPIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQ
DVIVTVDDCGTEEGMRIEVDSMPDTESFIGRIVGRMAAQPVVDPNTGEILVERNGEITEA
IARDLVARGVPRVDVRTPMQCEAEHGVCRYCYGRNLASGQLVDLGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAILAEHDGVVHIVEDESGRRILL
SREEIVTDVMALPEGYQVLVADGETVAVGQVLASPPEGVEGDPVVASMDGVVFLDGQEFV
LRHEETQTTEYQVPASAHIRVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYLVDEV
QKVYKSQGVVTNDKHIEVIVRQMLRKVAVEDPGDTDLLVGELIDRFTFNRINEEIIAEGG
EPATAQQVLLGITKASLATESFLSAASFQETTRVLTEAAIHGKVDYLRGLKENVIIGKLI
PAGSGFWARKRKAEGLTAHDEASLAAMQEEQLRQPTSIEEVKEQLEGQASALPASTGVAV
AEAPEAQLPAGSGDDTSPASAEPGAEAESEAAEGEGGEE
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgatgagcattggcaggcggtcgcgagactcgcatcaggggctggacgtcaac
gacttcgacgcgattcgcattagcctggcctcgccggaagcgatccggagttggtcgcac
ggcgaggtcaccaagcccgagacgatcaactaccggacgctgcggccggagcacggcggg
ctgttctgtgagcggatcttcggaccgacccgcgacttcgagtgctactgcggcaagtac
aagcgggttcgccacgccggcacaatctgcgacaagtgcggcgtggaggtgacccgctcg
aaggtccggcgcgagcgcatgggccatatcgagctggccgcaccggtcgcgcacatctgg
tacgtgaagggcacgccgagccgtctcggcctgctcctcgacatttcgccgcgcaacctg
gagcgcgtcctctacttcgcgtcctacctcgtgaccgaggtggacgaggagaagcgcgag
gcgctgatccgcgagatctatgaggagctcgaggccgagctggcggagctcgaccgggag
cttgaggctcggaccgctgacatcacgtcggcgatcgaggcggagctgtcgcacctgcgg
gccggggctgagtccctcggccagtcggtcgagcagcgcctcgcggagcagaaggcggag
ctggaccaggaggcgacggcggttcgcgagcggctggagagcctgctcggcgaggcggcg
ccggaggagatcgtcttccgcgggcgcaccatcgtgcgcgaaggggaggcggtcaacgag
gatcggctccaggccctctccgaggcggtcaacgaagagcgcgaggagctggagcgccag
gccgagcatgatgtgactagcggtcaggctctggccgaggcggagcaggaccagctccgg
tacgacgccgacgagaagacgcgccagatcgtccaggagtacgagcagcagaagcaggcg
ctgcgggccgaggccgaggcgatggtccgcgcgatcagcgacctcaagccgctgcaggtc
ctgaccgagacgcagtaccgcgaggccatggagctggcgcccggtgtgttcaaggccggg
atgggcgccgaggccgtctacgaggtcgtgtccaagatggacctcgacaagctctcggcg
gagctgcgccaggagatccattcggtcagcggccagcggcgcaagaaggctgcgaagcga
ctgcgggtggtcgaggcgctgcgcaagagcggcaaccggccggagtggatgatcttcacc
gtcctgccggtgatcccgccggatctgcgcccgatggtgcagctcgacggtgggcgcttt
gcgacgtccgacctgaacgacctgtaccgccgcgtcattaaccggaacaaccggctgaag
cggctgctggagctgggagcgccggacatcatcgtgcgcaacgagaagcgcatgctccag
gaggccgtggacgcgctgatcgacaacgggcggcgcggccgtgtggtgtcgggcagcggc
aagcacaagctcaagagcctgtccgacatgctcaagggcaagcagggccggttccgccag
aacctgctgggtaagcgggtcgactactcgggccgctcggtgatcgtggtcggcccggat
ctcaagctgcaccagtgcggtctgcccaagcggatggcgctggagctgttcaagccgttc
gtgatgcagaagctggtggcccagggctacgctcacaacatcaaggccgccaagcggctg
gtcgagcgggtcgatccgcacgtctgggacgtgctggagcaggttatcgccgactatctg
gtcctgctgaaccgggccccgacgttgcaccggctcggtatccaggcgttcgaggtcaag
ctgatcgaggggtctgccatccagttgcacccgttggtctgcgcggccttcaacgccgac
ttcgacggtgaccagatggcggtacacgtgccgctctcggcggcggcgcagcaggaggcg
cgggagcgcatgctctcgacccgcaacctgctcgacccgtcggacggcgacccggtgatc
acaccgacccaggacatcgtgctgggctgctactacatgacgctgcctcggccgggtgcg
cgcggcgagggcaaggtcttcgccgggccgcacgaggtggagctggcctatcggaccggg
gtggtcgacctgcaggcgcagatcaaggtgcgcctggagctgaacggctccggcccgcag
ttggtcgacaccacggtcggccgggtgctgctgaacgaggttatcccggacgagctcggc
ttctggaacgagacgatggaccggaaggcgctgcgccggctggtcgccgcctgctaccgg
gagctcgggccggaggtcaccgccgagatggcggacaacatcaagacgatcggcttcaac
tatgcgaccaagggtggcctgacgatcggcctgacggacgtccacatcccggagagcaag
gaagccatcattgccgcggccgacgccaaggtcgaggaggtcgagcgccagtatcgccgt
ggtctgatcacggacgctgagcggcatcgcgaggtggtcaacatctggaacgatgcccgt
gacgagctggcgaaggctgttgaggccgggctcggcgtcaacaacgccctgtacatgatg
agtacctccggggcgaagggtaacatcaaccagatcagccagatggccggtatgcgcggt
ctgatgctcgacccgggtgggaagatcatcgacctcccgattcggtcgaacttccgcgag
ggcctcagcgtgctggagtacttcatctccacgcacggtgcccggaagggtctagccgac
accgcgctgcgcacggctgactccggttacctgacgcggcgtctggtcgatgtcgcccag
gacgtgatcgtgacggtggacgattgcggcaccgaggagggcatgcgcatcgaggtcgac
tcgatgccggacaccgagtccttcatcgggcggatcgtcgggcggatggcggctcagccg
gtagtcgacccgaacaccggggagatcctcgtcgagcgcaacggggaaatcaccgaggcg
atcgcacgggatctggtggcgcgcggcgtcccgcgggtggatgtgcgcacgccgatgcag
tgcgaggcggagcacggtgtctgccgctactgttacgggcggaacctggccagcggccag
ctcgtcgacctgggcgaggcggtcggcatcatcgccgcccagagcatcggtgagcccggt
acgcagttgacgatgcggaccttccacaccggtggcgtcgcgggtgaggacatcaccacg
ggtctcccgcgcgtggaggagctcttcgaggctcgcgagccgaaggggaaggcgatcctg
gcggagcacgacggtgtggtccacatcgtcgaggacgagagtggccgccgcatcctgctc
agccgcgaggagatcgtgaccgacgtgatggcgctgccggagggctaccaggtgctggtg
gccgacggcgagaccgtcgcggtcggacaggtgctggcctcgccgccggagggcgtcgag
ggcgacccggtggttgccagcatggacggtgtcgtcttccttgacgggcaggagttcgtc
ctgcggcacgaggagacgcagaccaccgagtaccaggtgccggcatcggcccatatccgg
gtcaacgacggtgacacggtgacaacgggcacccagttgaccgatgggaacctcgacccg
cagcagatcctccagaccatggggcgcgccgcagtgcagcgctacctggtcgacgaggtg
cagaaggtctacaagtcgcagggcgtggtgaccaacgacaagcacatcgaggtcatcgtg
cgccagatgctgcggaaggtcgcggtggaggatccgggcgacaccgacctgctggtcggg
gagctgatcgaccggttcaccttcaaccggatcaacgaggagatcatcgccgagggtggc
gagccggcgacggcgcagcaggtgctgctcggcatcaccaaggcgtcgctggcaaccgag
agcttcctgtcggcggcctccttccaggagaccacgcgggttctgaccgaggccgcgatc
cacggcaaggtcgactacctgcgcggcctgaaggagaacgtcatcatcggcaagctgatc
ccggccggctccgggttctgggcgcgcaagcgcaaggccgaaggtctgacggcgcacgac
gaggcgtcgctggccgcgatgcaggaggagcagctacgccagccgacctcgatcgaggag
gtcaaggagcagcttgagggccaggcgtcggctctgcctgcatcgaccggcgtggcggtg
gctgaggcgccggaggcgcagttgccggccggttcgggcgacgacaccagcccggcatcc
gcagagccgggggccgaggcggagagcgaagccgctgagggcgagggcggggaggagtag
DBGET
integrated database retrieval system
