Sphaerobacter thermophilus: Sthe_3251
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Entry
Sthe_3251 CDS
T01128
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sti
Sphaerobacter thermophilus
Brite
KEGG Orthology (KO) [BR:
sti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sti03016
]
Sthe_3251
Enzymes [BR:
sti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sthe_3251
Transfer RNA biogenesis [BR:
sti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sthe_3251
Prokaryotic type
tRNA splicing ligases
Sthe_3251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACZ40651
UniProt:
D1CA08
LinkDB
All DBs
Position
2:complement(927131..928594)
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AA seq
487 aa
AA seq
DB search
MAQQRTSVPITRVERYVYEIPAHGEMRVPARIYADEELIEELTAPAAQEWSALQQLVNVA
SLPGIQKAALAMADVHPGYGFPIGGVGAFDPKEGVISVAGVGFDINCGVRLLATELTRAD
LEGKEDRVADALFHGVPAGLGSTGELKLTEKEIDRVLREGAHYAVNLGYGTPADLTYVEE
QGRMSGADPDAVSRTAKQRQLRQVGTLGSGNHYVEVQVVDEIYDEEAARAFGLAVGQVTI
MLHTGSRALGHQIGTDYLPFLERAARKYNIPIRDRELVCAPVESPEGRQYYAAVMAGANT
AFANRQVLTHLIREALNKALGVAPESIRTVYEIAHNTVKFEEHEVNGRRKRLLVHRKGAT
RAFGPGRPEIPERYRSVGQPVLVGGTMGTASYVLRGTEKGMRDTFGSALHGAGRAKSRTK
AKKEYPADRVIRQLKERGITVRAHGRSSISEEAPGAYKDVEQVVDIMAGAGVIAKVARLR
PVVTIKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcagcggacaagcgtaccgatcacgcgcgtcgagcgctacgtgtacgagatc
ccggctcacggtgagatgcgcgtcccggcgcggatctacgccgacgaggagttgatcgag
gagctgacggcccccgcggcgcaggagtggagcgcgctgcagcagctcgtgaacgtcgcc
agcctacccggcatccagaaggcggcgctggcgatggccgacgttcaccccggctacggc
ttcccgatcggcggcgtcggcgcgttcgaccccaaggagggcgtcatcagcgtcgccgga
gtcgggttcgacatcaactgcggcgtgcgcctgctcgccaccgagctgacccgtgccgac
ctggagggcaaggaggaccgggtggccgatgccctcttccacggcgtcccggccgggctc
ggcagcaccggggagttgaagctcaccgagaaggagatcgaccgggtgctgcgcgagggc
gcgcactatgccgttaacctcggctacggcaccccggccgatctgacctacgtcgaggag
caggggcggatgtccggtgccgacccggacgccgtgagccgcacggccaagcagcggcaa
ctgcggcaggtcggcacgctcggttcgggcaaccactacgtcgaggtgcaggtcgttgat
gagatctacgacgaggaagccgcccgcgccttcggcctcgcggtggggcaggtcaccatc
atgctccacaccggcagccgcgcgctcggccaccagatcggcaccgactacctgccgttc
ctggagcgggctgcccggaagtacaacatcccgatccgcgatcgcgagctggtttgcgcg
cccgtcgagagcccggagggacggcagtactacgcagcggtcatggccggcgccaacacg
gccttcgccaatcgccaggtgctgacccacctgatccgggaggcgctcaacaaggcgctc
ggcgtcgcgcccgagtcgatccgcaccgtctacgagatcgcgcacaacaccgtgaagttc
gaggaacacgaggtgaacggccggcggaagcgcctgctcgtgcaccgcaagggcgccaca
cgtgcgttcgggccgggtcgccccgagatcccggagcgctaccgctcggtcggccagccg
gtgctggtcgggggcacgatgggcaccgccagctacgtcctacgcggcaccgagaagggg
atgcgcgacaccttcggcagcgcgctgcacggcgccgggcgggcgaagtcgcggaccaag
gcgaagaaggaatacccggcggaccgcgtgatccgtcagttgaaggagcgcggcatcacc
gtgcgcgcccacggccgctcatcgatcagcgaggaggcgcccggcgcctacaaggacgtc
gagcaggtggtggacatcatggccggggccggggtcatcgcgaaggtcgcccggctgcgg
ccggtcgtgaccatcaagggctga
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