Streptomyces sp. ID38640: G7Z12_03610
Help
Entry
G7Z12_03610 CDS
T11207
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stid Streptomyces sp. ID38640
Pathway
stid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G7Z12_03610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stid03400
]
G7Z12_03610
Enzymes [BR:
stid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G7Z12_03610
DNA repair and recombination proteins [BR:
stid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G7Z12_03610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QIK05269
UniProt:
A0A6G7SPG4
LinkDB
All DBs
Position
complement(896765..897712)
Genome browser
AA seq
315 aa
AA seq
DB search
MSPMTVVEGRRLSLTNLDKVLYPETGTTKGEVLHYCTTIAGPLLAHLHDRPLSFLRYPDG
PDGQRFFTKNVPPGTPSWVKTCEVPHSTSGPTRQVLLQDLPSLVWAANLVVELHTPQWTR
QDPGVADRLVFDLDPGAPATIVECCTAAQWLHDRLAADGLDACAKTSGSKGLHLIVPVEP
TPSERTTAYARSLAVEAAAALPDLVVHKMTKALRPGKVFIDFSQNAAAKTTAVAYTLRAR
AAPTVSAPVTWDEIADCTDPRQLTFLFDEIAPRCELHGDLLAPLLDPDRARPLPAAAPSR
ASAAPPRPGSARGSA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatgaccgtcgtggaggggcggcgcctctcgctgaccaacctggacaaggtc
ctctatcccgagacgggcaccaccaagggcgaggtgctgcactactgcaccaccatcgca
ggcccgctgctggcccacctccacgaccggccgctctccttcctgcgctaccccgacggg
ccggacggccagcgcttcttcaccaagaacgtgccgcccggcacgccctcctgggtgaag
acctgcgaggtcccccattcgacgtcggggcccacccggcaggtcctgctgcaggacctg
ccctcgctcgtctgggccgcgaacctggtcgtcgagctgcacaccccgcagtggacacgg
caggatccgggcgtcgccgaccggctcgtcttcgacctcgatcccggtgccccggccacc
atcgtggagtgctgcaccgcggcacagtggctgcacgaccggctggcggcggacggcctc
gatgcctgtgccaagaccagcggctccaagggtctgcacctcatcgtgcccgtcgagccc
acaccgtccgagcggaccaccgcctacgccaggagcctcgccgtcgaggccgcggcggcc
ctgccggacctggtcgtgcacaagatgaccaaggcgctgcgccccggcaaggtcttcatc
gacttctcgcagaacgccgccgccaagaccaccgcggtcgcctacaccctgcgggcccgt
gccgcccccaccgtctcggccccggtcacctgggacgagatcgccgactgcaccgacccg
cggcaactcacctttctcttcgacgagatcgcgccacgctgtgaactccacggggatctg
ctcgccccgctcctcgacccggaccgcgcccgcccgctgcccgccgcggcgccctcccgc
gcatcggcggcaccccctcggccggggtccgcccggggttcggcttag
DBGET
integrated database retrieval system
