Streptomyces sp. ICC1: DRB96_06565
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Entry
DRB96_06565 CDS
T10586
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stii Streptomyces sp. ICC1
Brite
KEGG Orthology (KO) [BR:
stii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stii03016
]
DRB96_06565
Enzymes [BR:
stii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DRB96_06565
Transfer RNA biogenesis [BR:
stii03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DRB96_06565
Prokaryotic type
tRNA splicing ligases
DRB96_06565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWZ12035
LinkDB
All DBs
Position
complement(1427318..1428511)
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPASVEDSAMRQLQNTAGLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSGLRSQIERAIPVGAGMHRDPVDPG
RLYGFSENGFGDLWERFDYVADAVKFRRDRAMRQIGTLGTGNHFIEVSTDMSGAVWLMLH
SGSRNIGNELADFHINVARGLSHNQGLIDRDLAVFLAATPEMQEYRNDLFWAQEYAKYNR
AVMMSLFKEVIRKQFRKAKVSFGQEISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRKMSRTAAKRKFSVRDLAEQTKGVECRKDSG
VVDEIPGAYKSIEQVIDQQTDLVEVVAKLKAVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacgtagaagtgccgggggcgaaggtccccatccggatgtggaccgatccggcg
tcggtcgaggacagcgcgatgcgccagctgcagaacaccgccggcctgccgtggatcaag
ggtctggccgtcatgccggacgtccactacggcaagggcgcgacggtgggctcggtcatc
gccatgaaggacgcggtctgtccggcggcggtgggcgtcgacatcggctgcggcatgtcg
gcggtgaagacctcgctgacggcgaacgacctgccgggggacctgtcgggactgcgctcg
cagatcgagcgggcgatcccggtgggggcggggatgcaccgggatccggtggatccgggg
cggctgtacgggttctcggagaacgggttcggggatctgtgggagcgcttcgactacgtc
gcggatgcggtgaagttcaggcgggaccgggccatgcggcaaatcgggacacttgggacg
ggaaaccacttcattgaggtttcaacagacatgtccggggcggtttggctcatgctgcac
tcggggtctcggaacatcggcaacgagttggcggacttccacatcaacgtggcccggggg
ctttcgcacaaccaggggctgatcgaccgggatctcgcggtgttcctcgcggcgaccccg
gagatgcaggagtaccgcaacgacctcttctgggcgcaggagtacgccaagtacaaccgt
gccgtgatgatgagcctgttcaaggaggtcattcgcaagcagttccgcaaggcgaaggtc
tccttcgggcaggagatcagctgtcaccacaactatgtggcggaggagcggtacgacggc
atggacctgctggtcacgcgcaagggcgcgatccgcgccggcagtggggactacgggatc
atccccggctcgatgggcaccggctcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactcggcctcgcacggcgcgggccggaagatgagtcgtacggctgcgaagcggaag
ttctcggtgcgcgacctcgcggaacagaccaagggcgtggagtgtcgcaaggactcgggc
gtcgtggacgagatcccgggcgcgtacaagtcgatcgagcaggtcatcgaccagcagacc
gacctggtggaggtcgtggccaagctcaaggccgtcgtctgcgtcaagggctga
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