Streptomyces sp. ICC1: DRB96_11820
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Entry
DRB96_11820 CDS
T10586
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stii Streptomyces sp. ICC1
Pathway
stii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DRB96_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stii03021
]
DRB96_11820
03019 Messenger RNA biogenesis [BR:
stii03019
]
DRB96_11820
Transcription machinery [BR:
stii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DRB96_11820
Messenger RNA biogenesis [BR:
stii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DRB96_11820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWZ12899
LinkDB
All DBs
Position
2498241..2500397
Genome browser
AA seq
718 aa
AA seq
DB search
MSDTTDLMGAADTNVDTSAPAAGAATKRRRSGTGLDGMVLAELQQVASGLGIRGTARMRK
GQLIEVIKEAQAGSSAPKAAASAAAAAPADTAEAKPKRRATSKARTGETAAPAPAEKTAA
PAQIDIPGQPASEDAPVGERRRRRATAPSGSPEGSAPAAVQVEQKTETAPAAQTEAKAEA
ATAVSGQAAQAQDGEGRGRRDRRERGNDRAERGERGERQGRRDRGAKADDQGQGAQGQSQ
GGQSQGGQGQGGQGQGGQGQQGGRQDRTDRQDRQQGGRGQGQGGQGQQGGRQDRDRQDNG
PQDDFDEDGRRGRRGRYRDRRGRRGRDEFAPVETPVADDDVLIPVAGILDILDNYAFIRT
SGYLPGPNDVYVSLAQVRKAGLRKGDHTTGAVRQPKDGERREKFNALVRLDSVNGMAPES
GRGRPEFQKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQ
AIANAITVNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIER
AKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIED
GGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDPSGTRKEE
ILLNSEELAIVWKLRRVLHALDSQQAIELLLDKMKQTKSNAEFLMQIAKTTPSGKNDD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgctgccgacaccaatgtcgacaccagtgccccc
gccgcgggcgccgcgaccaagcgtcgccgctccggcaccggccttgatggcatggtcctg
gccgagctgcagcaggtcgcgtcgggcctcggcatcaggggcaccgcgcggatgcgcaag
ggccagctgatcgaggtcatcaaggaggcgcaggcgggcagcagtgcccccaaggccgcg
gcctccgccgccgctgccgcgcccgccgacaccgccgaggccaagccgaagcgccgtgcc
accagcaaggcccgtacgggcgagaccgccgccccggcgcccgccgagaagaccgccgca
ccggcgcagatcgacatcccgggccagccggccagcgaggacgccccggtcggcgagcgt
cgccgccgccgtgccaccgccccctccggcagccccgagggttcggcccccgcggccgtg
caggtcgagcagaagaccgagaccgccccggccgcgcagaccgaggccaaggccgaagcg
gccacggccgtctccggccaggccgctcaggcgcaggacggcgaaggccgcggccggcgc
gaccgccgtgagcgcggcaacgaccgtgccgagcgcggcgagcgcggcgagcgccagggc
cgccgtgaccgcggtgccaaggccgacgaccagggccagggcgcccagggtcagagccag
ggcggtcagagccagggcggtcagggccagggcggccagggccagggcggtcagggccag
cagggcggccgccaggaccggaccgaccgtcaggaccgccagcagggcggccgcggtcag
ggccagggcggccagggtcagcagggcggccgtcaggaccgggaccgtcaggacaacggc
ccgcaggacgacttcgacgaggacggccgtcgcggccgtcgcggccgctaccgcgaccgc
cgtggccgtcgcgggcgcgacgagttcgccccggtcgagactccggtcgccgacgacgac
gtcctgatccccgtcgcgggcatcctcgacatcctcgacaactacgcgttcatccggact
tcgggctacctgcccggcccgaacgacgtgtacgtctccctcgcccaggtccgcaaggcc
ggtctgcgcaagggcgaccacaccaccggtgcggtccgccagcccaaggacggcgagcgc
cgcgagaagttcaacgcgctcgtgcgtctggactccgtcaacggcatggcgcccgaatcc
ggccgcggtcgcccggagttccagaagctgaccccgctctacccgcaggaccggctccgt
ctggagaccgacccgggcgtgctgaccacccgcatcatcgacctcgtgtcgccgatcggt
aagggccagcgcggtctgatcgtggctccgccgaagaccggtaagaccatgatcatgcag
gcgatcgccaacgcgatcacggtcaacaaccccgagtgccacctgatggtcgtcctggtc
gacgagcgtccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatctcc
tcgaccttcgaccgcccggccgaggaccacaccaccgtcgccgagctggccatcgagcgc
gccaagcgtctcgtcgagctcggccacgacgtggtcgtcctgctggactccatcacccgc
ctgggacgcgcgtacaacctcgccgcccccgcctccggccgcatcctgtccggtggtgtc
gactcgaccgcgctctacccgccgaagcgcttcttcggtgccgcgcgcaacatcgaggac
ggcggctcgctgaccatcctggccaccgcgctggtcgacaccggctcgcgcatggacgag
gtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccggaagctc
gccgacaagcgcatcttcccggccgtggacgtggacccctcgggcacccgcaaggaggag
atcctcctcaacagcgaggagctcgccatcgtctggaagctgcgccgggtgctgcacgcg
ctcgactcgcagcaggccatcgagctgctcctcgacaagatgaagcagacgaagtcgaac
gccgagttcctcatgcagatcgcgaagacgaccccgtcgggcaagaacgacgactga
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