Streptomyces sp. ICC1: DRB96_16945
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Entry
DRB96_16945 CDS
T10586
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stii Streptomyces sp. ICC1
Brite
KEGG Orthology (KO) [BR:
stii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stii03019
]
DRB96_16945
Enzymes [BR:
stii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DRB96_16945
Messenger RNA biogenesis [BR:
stii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DRB96_16945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
SLFN-g3_helicase
nSTAND3
T2SSE
NACHT
nSTAND_NTPase5
ResIII
NTPase_1
PhoH
TsaE
AAA_30
AAA_25
UvrD-helicase
DUF6139
SRP54
Motif
Other DBs
NCBI-ProteinID:
AWZ13707
LinkDB
All DBs
Position
complement(3568208..3572185)
Genome browser
AA seq
1325 aa
AA seq
DB search
MSTSFAALQTLLGEISLRDAHRLGRRLEGARRIRKPEAKQAVLDEIAAEAEKAAARLAGR
ASRMPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVIITSATIDPQRFSRHFGD
APVVEVSGRTYPVEVRYRPLLEEDDEDAADSDRDQITAICEAVDELQAEGPGDVLVFLSG
EREIRDTADALNKRNLRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVPG
IKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPSE
KDHNKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVIAAALSIQDPRERPSDKQT
QADQNHARFKDETSDFLSFLNMWRYVREQQKERGSSAFRRMCKQEYLNFLRIREWQDIYS
QLRTVAKTMGIHVNEADAPETSVHISLLAGLLSHIGLKDTDKNEYLGARSAKFAIFPGSS
LFKKQPKFLMSAELVETSRLWARVNAKVEPEWVEPLAQHLIKRTYSEPHWEKDQAAVMAF
EKVTLYGVPIVAQRKINYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRKLLTEVEEL
ENRARRRDIVVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKKHEEPELLDFEREMLLTEK
AAGVTKADYPDSWAQGPLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQIPGLR
EEVVTELIRSLPKPIRRHYVPAPNFATRFLATARPLQEPLHVTLARELHRMVGVPVTAED
FDLGRIPDHLKITFRIVDERRKNLAEAKDLEALRLQLKPKARQALSQAAAASAEREGGES
VEKTGLTDWTIGALPKVFETLPLRRGRRGDTPLAGQPVKAYPALVDAGTSVSVRLFDTEA
EQQQAMRLGTRRLILLNVTVNPAKFASDHLSNQQKLALSRNPHGSIQALFDDCATAAADH
LIARHGGPAWDEAGFRKLYEAVRADLVDTTVRTITQVQQVLAAWQACERRLKATSSLALM
ANVQDVRNQLAALVPTGFVTLAGLRRLPDLMRYLVAADRRLQQMPTGVQRDTTRMEKVHE
MRDEYLWLLEQLPKGRPVPAEVTEIRWMIEELRVSYFAHALGTAYPISDKRIVKAVDAAA
PGPAR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctgcagacgcttctcggtgagatctccctccgtgacgcg
caccgcctcggccgccgcctcgaaggcgcccgccgtatccgcaagcccgaggccaagcag
gccgtgctcgacgagatcgccgcggaggccgaaaaggccgccgcgcgactggccggacgc
gcctcgcggatgccggaggtcacgtatcccgagaacctgcccgtcagccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgcgggcgagaccggctcc
ggcaagaccacgcagatccccaagatctgcatggagctggggcgcggtgtccggggcatg
atcgggcacacccagccccgccggatcgcggcccgcacggtcgcggagcgcatcgccgag
gagctgaagtccgagatcgggcagaccgtcggctggaaggtccggttcaccgaccaggtg
gaccaggacgccaccttcgtgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccacgagcggtcg
ctgaacatcgacttcctgctcggctacctggccacgctgctgcccaagcgccccgacctc
aaggtgatcatcacctcggcgacgatcgacccgcagcgcttctcccggcacttcggtgac
gccccggtcgtcgaggtcagcggccgtacgtacccggtggaggtccgctaccgcccgctc
ctcgaagaggatgacgaggacgcggcggacagcgaccgcgaccagatcaccgcgatctgc
gaggccgtcgacgagctccaggcggagggcccgggcgacgtcctggtcttcctctccggc
gagcgcgagatccgcgacaccgcggacgccctcaacaaacggaatctgcggttcacggaa
gtcctccccctctacgcgcgcctctcgcacgccgagcagcaccgggtgttccagcagcac
accggccgtcggatcgtcctcgcgacgaacgtcgccgagacctcgctgaccgtcccgggc
atcaagtacgtgatcgacccgggcaccgcccgcatctcgcgctacagccaccgcaccaag
gtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggccgc
tgcggccgtaccagcgacggcatctgcatccgcctctactccgaggacgacttcctgacc
cgtccggagttcacggacgccgagatcctgcgcacgaacctggcctccgtcatcctccag
atgaccgcggccggcctcggcgagatcgagaagttccccttcatcgacccgccggaccac
cgcaacatccgcgacggcgtgcagctcctccaggagctcggcgcgctggatccctcggag
aaggaccacaacaagcggctcaccccgatgggccgccagctgtcccagctcccggtggac
ccgcgcctggcccgcatggtggtggaggcggacaagaacaactgcgtccgcgaggtcatg
gtcatcgcggcggccctgtccatccaggacccgcgcgaacggccctcggacaagcagacg
caggccgaccagaaccacgcccgcttcaaggacgagacgagcgacttcctctccttcctg
aacatgtggcgctacgtccgcgagcagcagaaggagcgcggctcttccgccttccgccgg
atgtgcaagcaggagtacctgaacttcctgcggatccgcgaatggcaggacatctattcg
cagctgcgtacggtcgccaagaccatgggcatccacgtcaacgaggccgacgcccccgag
acgagcgtgcacatctcgctgctggccggcctgctgtcgcacatcgggctcaaggacacc
gacaagaacgagtacctgggggcccggtccgccaagttcgcgatcttcccgggttcctcg
ctgttcaagaagcagccgaagttcctgatgtcggccgagctggtggagacctcgcggctg
tgggcccgggtgaacgccaaggtcgagccggagtgggtcgagcccctggcccagcacctg
atcaagcgcacgtacagcgagccgcactgggagaaggaccaggcggccgtgatggccttc
gagaaggtcaccctgtacggcgtgccgatcgtcgcccagcggaagatcaactacggccgg
atcgaccccgaggtctcgcgcgagctgttcattcgcaacgccctggtcgagggcgactgg
cggacccaccacaagttctacgccgacaaccgcaagctcctcaccgaggtggaggagctg
gagaaccgggcccggcgccgcgacatcgtggtcgacgacgagaccctcttcgacttctac
gaccagcggatccccgaacacgtggtctccggggcgcacttcgactcctggtggaagcac
aagaagcacgaagagcccgagctgctcgacttcgagcgcgagatgctcctgacggagaag
gcggccggggtcaccaaggccgactatccggactcctgggcgcagggcccgctgaagttc
cgggtcacctaccagttcgagccgggcgcggacgcggacggcgtgaccgtccacatcccg
ctccaggtgctgaaccaggtcacggacgagggcttcgactggcagatcccgggccttcgc
gaggaggtggtcaccgagctgatccggtccctcccgaagccgatccgccggcactacgtg
cccgcgccgaacttcgcgactcgcttcctggccacggcgcggccgctgcaggagcccctg
cacgtgacgctcgcccgcgagctgcaccggatggtcggggtcccggtcaccgccgaggac
ttcgacctcggccgcatccccgaccacctgaagatcaccttccggatcgtcgacgagcgc
cgcaagaacctcgccgaggccaaggacctggaggccctgcggctccagctcaagcccaag
gcccgccaggcgctctcgcaggccgccgcggccagcgccgagcgcgagggcggggagtcg
gtggagaagaccgggctgacggactggacgatcggcgccctgcccaaggtcttcgagacc
cttcccctccgccgtggacggcgtggggataccccattggccggccagcccgtgaaggcg
tacccggcgctcgtggacgccggtacgagcgtctccgtacgcctcttcgacaccgaggcc
gagcagcagcaggcgatgcggctcggcacccggcggctgatcctgctcaacgtcacggtg
aacccggccaagttcgcctcggaccacctcagcaaccagcagaagctggccctgtcgcgc
aatccgcacggctccatccaggcgctgttcgacgactgcgcgaccgccgcggccgaccac
ctgatcgcgcggcacggcggaccggcgtgggacgaggccgggttccgcaagctctacgag
gccgtgcgggccgacctggtggacacgaccgtgcggacgatcacgcaggtgcagcaggtg
ctggcggcctggcaggcctgcgagcggcggctgaaggccacgagcagcctggccctgatg
gcgaacgtccaggacgtgcggaaccagctggcggccctggtgccgaccgggttcgtcacg
ctcgccggactgcgccggctgccggacctgatgcgctatctggtggcggcggaccggcgg
ctccagcagatgccgacgggcgtccagcgcgacaccacgcgcatggagaaggtccacgag
atgcgggacgagtacctgtggctgctggagcagttgcccaagggccgcccggtcccggcg
gaggtcaccgagatccgctggatgatcgaggaactgcgggtcagctacttcgcgcacgcc
ctcggaacggcgtatccgatctccgacaagcgcatcgtgaaggcggtggacgcggcggca
ccgggaccggcccgatga
DBGET
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