Streptomyces sp. ICC1: DRB96_19895
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Entry
DRB96_19895 CDS
T10586
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stii Streptomyces sp. ICC1
Pathway
stii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DRB96_19895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stii03400
]
DRB96_19895 (mfd)
Enzymes [BR:
stii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DRB96_19895 (mfd)
DNA repair and recombination proteins [BR:
stii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DRB96_19895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
RecG_dom3_C
4HBT_3
Motif
Other DBs
NCBI-ProteinID:
AWZ14150
UniProt:
A0A2Z4V0I6
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All DBs
Position
complement(4206122..4209667)
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AA seq
1181 aa
AA seq
DB search
MSLHGLLDAVTRDPALAEAVTAAVDGNRMHVDLVGPAAARPLAIAALATRTERTVLAVTA
TGREAEDLAAALRSLMPPGRQDEVVDYPSWETLPHERLSPRSDTVGRRIAVLRRLSHPSK
DDPAAGPVSIVVAPIRSVLQPQVKGLGDLVPVSLRQGESVDLGEVTSALAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCR
ELLLTDQVRGRAAALAELHPELGELLHKIAEGIAVEGMESLAPVLVDDMELLIDVLPAGS
MAVVCDPERVRTRASDLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIAEVREHAREL
GMLWWSVSPFAADEEGALGSDTLQLGMHAPEAYRGDTARALADTKAWIAEGWRTVYLTEG
HGPAARTVEVLGGEGIPARLEADLATLEPSLVHVSCGSLDNGFVDQALKLAVLTETDLTG
QRTATKDLGRMPTRRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEY
APAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVKVKPLSRFQSE
GESKATLEGLREGSVDIVIGTHRLFSQETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLRE
GQCFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQSLEQVVVDFWEKKFDVLVSTT
IVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAA
IEGGPEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEEDVKAVREELTDR
YGKLPEPVENLLLVAGLRMLARACGVGDITLQGPNIRFGPVELRESQELRLKRLYPGAVL
KPATSQVLIPRPKTARVGGKPLVGRDLLGWTGEFLATILGS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggaccccgctctcgccgaagcggtc
accgcggcggtggacggcaaccgcatgcacgtggacctcgtcggacccgccgccgcccgg
cccctggccatcgccgcgctggccacccgtaccgagcggaccgtgctcgcggtcacggcc
accggccgcgaggccgaggacctggccgccgcgctccgctcgctgatgcccccgggccgc
caggacgaggtggtggactacccgtcctgggagacgctgccgcacgagcggctctcgccc
cgcagcgacaccgtgggccgccggatcgccgtgctgcgccggctgtcgcacccgagcaag
gacgatccggccgccggacccgtgtccatcgtggtcgcgccgatccgctccgtgctccag
ccgcaggtcaaggggctcggcgacctcgtaccggtgagcctgcgccagggggagagcgtc
gacctgggcgaggtcacctccgcgctcgcggccgccgcgtacgcgcgcgtcgagctcgtc
gagaagcgcggggagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgag
gagcacccgctgcgcgtggagttctggggcgacgaggtcgaggagatccgctacttcaag
gtcgccgaccagcggtccctggagatcgccgagcacggcctgtgggccccgccctgccgg
gagctgctcctcaccgaccaggtgcgcgggcgcgccgcggccctcgccgagctccacccc
gagctcggcgaactgctccacaagatcgccgaagggatcgcggtggagggcatggagtcc
ctcgccccggtcctggtcgacgacatggagctcctgatcgacgtactgcccgccggttcg
atggccgtggtgtgcgacccggagcgggtgcggacccgggcctccgacctggtcgccacc
tcgcaggagttcctgatggcctcctgggcggccaccgccggcggcggcgaggcccccatc
gacgtcggcgccgcctcgctgcgcgggatcgcggaggtacgggagcacgcgcgcgagctc
ggcatgctgtggtggtcggtgtccccgttcgccgccgacgaggagggggcgctcggcagc
gacaccctccagctcggcatgcacgcccccgaggcctaccgcggcgacaccgcccgggcg
ctggccgacaccaaggcctggatcgccgagggctggcgcaccgtctacctcaccgagggc
cacggcccggccgcccgcaccgtggaggtgctcggcggcgagggcatcccggcccgcctc
gaggccgacctcgcgaccctggaaccctccctggtccacgtctcgtgcggctccctcgac
aacggcttcgtcgaccaggccctcaagctcgccgtcctcaccgagaccgacctgaccggc
cagcgcaccgccaccaaggacctgggccggatgcccacccggcgccgcaagacgatcgac
cccctcaccctggaggtcggcgactacatcgtccacgagcagcacggcgtcggccgctac
gtcgagatggtgcagcgaaccgtgcagggcgccacccgcgagtacctcctcgtcgagtac
gcgcccgccaagcgcgggcagcccggcgaccggctctacatccccaccgaccagctggag
caggtcaccaagtacgtcggcggcgaggccccgaccctgcaccggctcggcggcgccgac
tggaccaagaccaaggcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatc
aagctctacagcgcccgcatggccgcccccggccacaccttcggccccgacaccccctgg
cagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctcaccaccatc
gccgaggtcaaggaggacatggagaagtcggtccccatggaccgcctgatctgcggcgac
gtcggctacggcaagaccgagatcgccgtgcgcgccgcgttcaaggcggtccaggacggc
aagcaggtcgccgtcctcgtaccgaccacgctgctggtgcagcagcacttcgggaccttc
tccgagcggtacgcgcagttccccgtcaaggtgaagccgctgtcgcgcttccagagcgag
ggcgagtcgaaggcgacgctggagggcctgcgcgagggctccgtcgacatcgtcatcggc
acgcaccggctcttctcgcaggagaccaagttcaaggacctgggcctggtcatcgtcgac
gaggagcagcggttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtc
gacgtgctgacgatgtccgcgaccccgatcccgcgcaccctggagatggcggtcaccggc
atccgcgagatgtccacgatcaccaccccgcccgaggagcgccacccggtcctcaccttc
gtcggcccctacgaggagaagcagatcggcgccgcgatccgccgcgaactgctccgcgag
ggccagtgcttctacatccacaaccgggtcgagtccatcgaccgggcggccgccaagctc
cgcgagatcgtgcccgaggcgcgcatcgcgacggcgcacgggcagatgtcggaacagtcc
ctggaacaggtcgtcgtggacttctgggagaagaagttcgacgtgctcgtctccacgacg
atcgtggagtccggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgac
aacttcggcctctcccagctccaccagctgcgcggccgcgtgggccggggccgcgagcgc
gggtacgcctacttcctctacccgccggagaagccgctcaccgagaccgcgcacgagcgg
ctcgcgacgatcgcccagcacaccgagatgggcgccggcatgtacgtggcgatgaaggac
ctggagatccgcggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggc
gtcggcttcgacctctacatccggatggtcggcgaggccgtggccgactaccgggcggcg
atcgagggcggcccggaggaggagccgccgctggaggtgaagatcgagctgccggtcgac
gcgcacgtcccgcacgactacgcgccgggcgagcggctgcgcctgcaggcctaccgctcg
atcgccgcggccaactccgaggaggacgtcaaggccgtccgcgaggagctcaccgaccgc
tacggcaagctgccggagccggtggagaacctgctgctggtggccggactgcggatgctc
gcccgcgcctgcggggtcggcgacatcaccctgcaaggccccaacatccgcttcgggccg
gtggagttgcgcgagtcgcaggagctgcgcctcaagcggctctacccgggcgcggtgctc
aagcccgccacctcgcaggtgctgatcccgcggcccaagacggcgcgggtgggcggcaag
ccgctcgtcgggcgggatctgctgggctggaccggggagttcctcgccacgatcctcggc
tcctag
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