Selenomonas timonae: H1B31_03585
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Entry
H1B31_03585 CDS
T10113
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
stim Selenomonas timonae
Pathway
stim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H1B31_03585 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stim03021
]
H1B31_03585 (rpoD)
Transcription machinery [BR:
stim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H1B31_03585 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
ANF_receptor
V-ATPase_G_2
Motif
Other DBs
NCBI-ProteinID:
QNH55029
UniProt:
A0A7G7VLN6
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All DBs
Position
766183..767325
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AA seq
380 aa
AA seq
DB search
MQTATARIERDEMTGMGNISELVAKGKSNGGTLTCGEFIETFSIWNMTPDDMDGLYQRLS
DESIEIVDDTAVGESSDDDVLEPVDDIDKDEEEIEIDLSVPEGVALDDPVRMYLKEIGRV
PLLTAEEEVELAQRMEAGDETARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLL
KAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQE
LGRDPTPDEVAKHMGLNTARVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAALDPAD
AASMMLLKEQIADVLKTLAPREAEVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAK
ALRKLRHPVRLRKLQGNIDL
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgcagacagcaacagcgcggatcgaacgagatgaaatgactggaatgggaaatatcagc
gagcttgtggcaaagggaaagtcgaacggcggaacactgacctgcggtgaatttatcgaa
acattcagcatatggaatatgacccccgacgatatggatgggctctatcagcgcctcagc
gacgagagcatcgagatcgtggacgatacggcggtcggcgagagcagcgatgatgacgtg
ctcgagccggtggatgacattgacaaggacgaggaggaaatcgagatcgacctcagcgtc
cctgagggggtcgcgctggacgatcctgtccgcatgtacctcaaggagatcggtcgcgtg
ccacttctgacggcagaggaggaggttgagcttgcgcagcgcatggaggcgggcgacgag
actgcgcgccatcggctcgaggaggcaaatctgcgccttgtcgtgagcatcgccaagcgc
tatgtcggccgcggcatgctctttctcgacctgatacaggagggcaacctcggactcctc
aaggcggttgaaaaattcgactacagcaagggctacaagttcagcacgtatgcaacgtgg
tggattaggcaggcgattacgcgtgcgattgccgatcaggcacgcacgatccgcatccct
gtccacatggtcgagacgatcaacaagtacatacgcatttcgcggcagctcctgcaggaa
ctcgggcgcgatcccacacccgacgaggtagcaaagcatatggggctgaatacggcgcgc
gtgcgtgagatcatgaagatcgcgcaggagcccgtttcgctcgagaccccgatcggcgag
gaggaggactcccatctcggcgactttatcgaggatgaggcggcgcttgaccccgcagat
gcagcctcgatgatgttgctcaaggagcagattgccgacgtgctgaagacacttgcgccg
cgtgaggcggaggttctgcgtctgcgcttcgggcttgaggacggtcgttcgcgcacgctc
gaggaggtcgggcagagcttcggtgtgacgcgtgagcgcatccgacagatcgaggcgaag
gcgctcaggaagctgcggcaccccgtgcggctgcgcaagttgcagggaaacattgatctt
tga
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