Selenomonas timonae: H1B31_03590
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Entry
H1B31_03590 CDS
T10113
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
stim Selenomonas timonae
Pathway
stim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H1B31_03590 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stim03021
]
H1B31_03590 (rpoD)
Transcription machinery [BR:
stim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H1B31_03590 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_10
Exonuc_VII_L
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QNH55030
UniProt:
A0A7G7VLN7
LinkDB
All DBs
Position
767368..768486
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AA seq
372 aa
AA seq
DB search
MTEGTEQPKAPGADIIERLLAKGKKNGGTLTYGELIDALQKQDMSPDEMDDMYQRFSDEG
VEIVDDVPGATVEEPVDDDPPEKEEEVEIDLTVPEGISLDDPVRMYLKEIGHVPLLTAEE
EVELAQRMEAGDESARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFD
YSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQELGRDPRP
EEIAKEMGISVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLL
REQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRH
PSRSKVLRDFLE
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggggacggagcagccaaaagcgccgggcgccgacatcattgaacgcctgctt
gccaagggcaagaagaacggcgggacgctgacatatggcgagctcattgacgcactgcaa
aaacaggatatgtcccccgacgaaatggacgatatgtaccagcgcttcagcgacgagggt
gttgagatcgtcgatgatgtgccgggtgcgacggtggaagaacccgtggacgatgatccg
cccgagaaggaagaggaggtcgagatcgacctcaccgtgcccgagggcatctcgctcgac
gatcctgtccgcatgtacctcaaggagatcggtcatgtgccgctcctcacggcagaggag
gaggttgagctcgctcagcgcatggaggcgggtgacgagagcgcacgccatcgactcgag
gaggcaaatctgcgcctcgttgtgagcatcgccaaacgctacgtcggacgcggtatgctc
tttctcgacctcatacaggagggcaaccttgggcttctcaaggcggtcgagaaattcgac
tacagcaagggctacaagttcagcacgtacgcaacgtggtggattcggcaggcgattacg
cgtgcgattgccgatcaggcacgcacgatccgcatccccgtgcacatggtcgagacgatc
aacaagctcatccgcatctcacgccagctcctgcaggaacttggacgtgacccgcgcccc
gaggagattgcaaaggagatgggcatcagtgtcgcacgcgtccatgagatcatgaagatc
gcgcaggagcctgtgtcgcttgagacgccgatcggcgaggaggaggactcccacctcggc
gacttcatcgaggacgaggctgcgcccgcacccgcagaggctgcgtcgttcatgctcctg
cgcgagcagctcgaggaggtcttggagacgctgaccgatcgcgagaagaacgtcctgcgt
ctgcgcttcgggcttgaggatgggcgttcgcgcaccctcgaggaggtcgggcagagcttc
ggtgtgacgcgcgagcgtattcgccagattgaggcaaaggcactgcgcaaactgcgccac
ccgagccgcagcaaggtgctgcgtgacttcttggagtag
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