Selenomonas timonae: H1B31_05540
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Entry
H1B31_05540 CDS
T10113
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
stim Selenomonas timonae
Pathway
stim02020
Two-component system
stim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H1B31_05540
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H1B31_05540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stim03021
]
H1B31_05540
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
stim02035
]
H1B31_05540
Transcription machinery [BR:
stim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H1B31_05540
Bacterial motility proteins [BR:
stim02035
]
Flagellar system
Flagellar assembly proteins
Stator
H1B31_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_23
GerE
HTH_Mga
DUF7291
Motif
Other DBs
NCBI-ProteinID:
QNH55381
UniProt:
A0A7G7VMN8
LinkDB
All DBs
Position
1171020..1171766
Genome browser
AA seq
248 aa
AA seq
DB search
MAEQPAENIDALWQAYATEKTVDVRNRIAEHYLPLVRLVAGRISISLPQHVDREDLLSSG
FFGLLDAIERYELARGNKFETYAGVRVRGAMLDHLRAKDWIPVSVRQNIKKYEKAVARLE
GQLGRTASDEELAEELDLTVEGLHHLEGQVSAATIIPLEEYLRTDTPASMEDGPVEHAEW
TEVKETLAAAIEKLPEKERTVVALYYYDEMTLKEIAAILHLSEARISQLHTKAIFRMRGS
LARMNEEV
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagccggcagaaaatattgatgcactgtggcaggcatacgcgacggaaaag
accgttgacgtacgcaaccgcatcgccgagcattatctgccgctcgttcgtcttgttgct
gggcggatttccatcagtcttccgcagcatgttgaccgggaggatctcctgagcagtggc
ttctttgggctgctcgatgcgattgagcgctatgagctcgcgcgcggcaataaatttgag
acctatgccggtgtgcgtgtacgcggagcgatgctcgaccatctgcgtgcaaaggactgg
attcccgtcagcgtgcgtcaaaacatcaaaaaatacgagaaggcggttgcgcgtctcgaa
ggccagctcggacgcacggcaagcgatgaagagcttgctgaggagctggatctcacggtt
gaagggctgcaccacctcgagggacaggtcagcgcggcgaccatcatcccactggaggaa
tatctgcgcacggatacgccggcctccatggaggacggccccgtagaacatgcggagtgg
actgaggtcaaggagacccttgctgcggcgattgagaaacttcccgagaaggagcgcacg
gtggttgcgctttattattacgacgagatgaccctcaaggaaattgcggcgattttgcac
ctttccgaggcacggatctcgcagctccatacgaaggcaatcttccgcatgcgggggtcg
cttgcacgcatgaatgaagaagtatga
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