Selenomonas timonae: H1B31_05585
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Entry
H1B31_05585 CDS
T10113
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
stim Selenomonas timonae
Pathway
stim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H1B31_05585 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stim03019
]
H1B31_05585 (rny)
Messenger RNA biogenesis [BR:
stim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H1B31_05585 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
DUF2178
Fe-ADH_2
Motif
Other DBs
NCBI-ProteinID:
QNH53393
UniProt:
A0A7G7VH00
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Position
1178277..1179833
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AA seq
518 aa
AA seq
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MKKEVAVIITELLTVIIAVAVGVAAGYVARRRTAEAQIGSAEDEAKRIVEEAGKKAETKQ
KEALLEAKEEIQRQRQEFERDTKERRSEIQRLERRTIQKEENLDRKLESIEKKEEGLARK
EARIDKTQAEITALYETQKQELERVSGLSSEEARTILMAEAEEELKHEKARKIKEYIQQT
KDEADKAAREILSVAIQRCAADHVAETTVSVVALPNDEMKGRIIGREGRNIRTLETLTGI
DLIIDDTPEAVILSGFDPVRREVARIALEKLIQDGRIHPARIEEMIEKARREVDQRIKEA
GEQATFETGVHGIHPELVRLLGRMRYRTSYGQNVLAHSIEVAHLAGLMAAELDCDVMLAK
RGGLLHDIGKAVSHEVEGPHVTVGADLARKYRESKEVINIIACHHGDEEATTIEAVLVAA
AVAVSAARPGARRESLESYIKRLKALEEIAESFDGVERCFAIQAGREIRVMVKPDKVDDA
GAAVLVHDIVKKIEGDLEYPGQIKATVIRETRVVDYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaggtggctgttattattactgaattactaacggtaattattgctgtcgcc
gttggtgttgctgcgggctatgttgcacgcagacgcacggcggaggctcagataggatca
gccgaagacgaagcaaagcgcattgtcgaagaagccggaaagaaggctgagacaaagcag
aaggaagcactgctcgaggcgaaggaggagatccagcgccagcggcaggagttcgaacga
gatacgaaggagcgccgcagcgagattcagcgccttgagcgccgcacgatccagaaggag
gagaatctcgaccgcaaacttgagtccatcgaaaagaaggaagaggggcttgcgcgtaag
gaggcacgcatcgacaagacgcaggctgagattacagcactctacgagacccagaagcag
gagctcgagcgcgtctcggggctctcgtcagaggaggctcgcacgattctcatggcggag
gcagaggaagagctgaagcatgagaaggcacggaagatcaaggagtacatccagcagaca
aaggacgaggcggacaaggcagcacgggagatcctgagcgtggcgatccagcgttgcgcc
gctgatcacgtggcggagacgacggtctcagttgtggcattgccaaacgacgagatgaag
gggcgcatcatcgggcgtgaggggcgtaatatccgcaccctcgagacgctgacgggcatc
gacctcatcatcgacgatacgccggaggcggtcatcctctccgggttcgaccctgtgcgg
cgcgaggttgcgcgcattgcgctcgaaaagctgattcaggacgggcgtattcatcccgca
cgcatcgaagagatgatcgagaaggcgcgacgtgaggtcgatcagcgcatcaaggaggcg
ggggagcaagcgacgttcgagacgggcgtccacggcatccatcctgagctcgtgcgtctc
ctcggacgcatgcgctatcggacgagctacgggcagaacgtgctcgcacactccatcgag
gtcgcgcatctcgcaggtctcatggcggcagagctcgactgtgatgtcatgctcgccaag
cgcggcggactcctgcacgacatcggcaaggcggtcagccacgaggttgaggggcctcat
gtgacggtcggcgccgatctcgcgcgcaagtaccgcgagtccaaggaagtcatcaacatc
attgcctgccatcatggcgatgaggaggcgacgacgatcgaggcggtgctcgtcgctgcg
gcggttgcggtctcggcagcacggccgggggcacgccgtgagagcctcgagtcctacatc
aagcgactcaaggcgctcgaggagatcgccgagtcgtttgacggcgtggagcgttgcttt
gcaattcaggcagggcgcgagatccgcgtcatggtaaagccggacaaggtggatgatgca
ggcgctgccgtgctcgtccacgacattgtaaagaagatcgagggcgatctcgaatatccg
gggcagatcaaggcgacggtcattcgtgagacgcgcgtcgtcgactatgccaagtaa
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