Streptomyces tirandamycinicus: DDW44_17950
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Entry
DDW44_17950 CDS
T06843
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stir
Streptomyces tirandamycinicus
Pathway
stir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDW44_17950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stir03021
]
DDW44_17950
03400 DNA repair and recombination proteins [BR:
stir03400
]
DDW44_17950
Enzymes [BR:
stir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDW44_17950
Transcription machinery [BR:
stir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDW44_17950
DNA repair and recombination proteins [BR:
stir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDW44_17950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AWI30449
UniProt:
A0A2S1SVM2
LinkDB
All DBs
Position
4036171..4040079
Genome browser
AA seq
1302 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLEAD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRAFNSTAEAIMAFDARELSLQAKIDIRFPIGTVPPRGWTPPADEEGHEGVGPWQQGDSF
RLTTTLGRALFNELLPEDYPFVDYTVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFY
WATRSGVTVAISDVVVPEAKKDIVAGYEAQDEKVQKQYERGLITKDERTQELIAIWTKAT
NEVAEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFRE
GLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRIA
ERGADGVLRKADDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVAAEVEEVKTR
SVLTCESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGD
DITQGLPRVVELFEARTPKGVAPISEVAGIVRVEETEKTKKIVITPDDGSDEAAYPISKR
AKLLVRDGDHVEVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI
EIIIRQMLRRVTIIESGDAELLPGELVERSKFEHENRRVVQEGGHPASGRPQLMGITKAS
LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLARYRNIRVEP
TEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgctgacgacatc
cgtcagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccctacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgccgcgtacatgatcacgtacgtggac
gaggagcgccgtacccgcgacctgccctcgctggaggcccatgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctggaggcccgcgccaagaagctcgaggccgac
ctggccgagctggaggccgagggtgccaaggccgatgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggacgcccggtcaccggtcccggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcggggccgc
accgtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggctttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtgcgcggcgag
ggccgtgcgttcaactccaccgccgaggcgatcatggcgttcgacgcccgggagctctcg
ctccaggcgaagatcgacatccgcttcccgatcggcaccgtcccgccgcgcggctggacc
ccgccggcggacgaggaggggcacgagggcgtcggcccctggcagcagggcgacagcttc
cgcctcaccaccaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccg
ttcgtcgactacacggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgag
cgctacccgaaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctac
tgggcgacccgctccggcgtcaccgtggccatctccgacgtcgtcgtccccgaggcgaag
aaggacatcgtcgcgggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgc
ggtctgatcaccaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgacc
aacgaggtcgccgaggcgatgaacgacaacttcccgaagaccaaccccatcttcatgatg
gtcaactcgggtgcgcgcggaaacatgatgcagatgcgtcagatcgccggtatgcgcggt
ctggtgtcgaacgccaagaacgagacgatcccgcgtcccatcaaggcgtccttccgcgag
ggcctgtccgtgctggagtacttcatctccacgcacggtgcccgaaagggtctcgccgac
accgccctgcgtacggccgactcgggttacctgacccgtcgtctggtcgacgtctcgcag
gacgtcatcatccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatcgcc
gagcggggcgccgacggtgtcctgcgcaaggcggacgacgtcgagacgtcggtgtacgcg
cggatgctcgccgaggacgtcgtcgtggacggcaaggtcatcgcgccggccaacgtcgac
ctcggtgacgtgctgatcgacgcgctcgtcgcggcggaggtcgaggaggtcaagacccgc
tcggtcctgacctgcgagtccgcggtcggcacctgtgcgtactgctacggccgttcgctc
gccaccggcaagctggtcgacatcggcgaggcggtcggcatcatcgccgcccagtccatc
ggtgagcccggaacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgac
gacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggc
gtcgccccgatctccgaggtcgccggcatcgtccgggtcgaggagaccgagaagaccaag
aagatcgtcatcactccggacgacggcagcgacgaggcggcgtacccgatctccaagcgc
gccaagctcctggtgcgggacggcgaccacgtcgaggtgggccagaagctcaccttcggt
gccaccaacccgcacgacgtgctgcggatcctcggccagcgcgccgtccaggtccacctg
gtcggcgaggtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatc
gagatcatcatccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgccgag
ctgctgcccggtgagctggtggagcgctcgaagttcgagcacgagaaccgtcgtgtggtc
caggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcg
ctggcgaccgagtcgtggctgtcggcggcgtccttccaggagacgaccagggtcctcacc
gacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatc
ggtaagctcatcccggccggtacgggcctcgcccgctaccgcaacatccgggtcgagccg
accgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcg
ccgttcggcacgggctccggccaggccgttccgctggaggactacgactacggtccgtac
aaccagtaa
DBGET
integrated database retrieval system
