Streptomyces tirandamycinicus: DDW44_20200
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Entry
DDW44_20200 CDS
T06843
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
stir
Streptomyces tirandamycinicus
Pathway
stir03420
Nucleotide excision repair
stir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDW44_20200
03430 Mismatch repair
DDW44_20200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stir03400
]
DDW44_20200
Enzymes [BR:
stir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDW44_20200
DNA repair and recombination proteins [BR:
stir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDW44_20200
MMR (mismatch excision repair)
Other MMR factors
DDW44_20200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWI30839
UniProt:
A0A2S1SWQ8
LinkDB
All DBs
Position
4548404..4552255
Genome browser
AA seq
1283 aa
AA seq
DB search
MSARITDPEQLKELLGVPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VQPEQVLGLTFTNKAAAELAERVRTALVRAGVTDPDVIDPDDPPGEPSISTYHAFAGRLL
TDHGLRLGLEPASRLLADATRYQLAARVLREAPGPYPALTKSFPSLVGDLLALEAELAEH
LVAPGELQAHDSALLRELEGVELGNADLRKVPEAAAARRELLDLVVRYREAKRSRDLLDF
GDQIALSARLALTRPEVGRILRDEFRVVLLDEYQDTSVAQRLLLAGLFGRGAAPDGTPAE
GAGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPRADGRPATRFTLSENRRSGGRLLDL
ANGLAEPLRARHEGVEALRPAPGAERDGSVRIALLPTHAEEIEWLADSIAHLVRTGKEPG
EIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLV
RLLTGPRWRIGARDLALLGRRARLMVHRPGAGEADADQRLAAAVEGTDPAEVVSLADALD
TFLEPAGPDDGLPFSAEARVRFARLATELRDLRRSLADPLMDVLHRVLATTGLDVELAAS
PHALAARRRETLAGFLDIAASFASLDGEATLLAFLGFLRTAEQYEKGLDNALPGGENTVK
VLTAHKSKGLEWDVVAVPGLVAGQFPSTRSRESWTSQAKVLPHELRGDAATLPGITSWDA
KGLRAFKEEMKAHQHTEELRLGYVTFTRPRSLLLGSAHWWGPTQKRRRGPSAFLEALYDH
CAAGFGEIEAWAEEPEEGAENPALHTAAAEQAWPLPLDPTATARRREAAGTVLAHLASMT
GAEAAAAPGWSRAVSGDAPSARPGDREGVWRDGSAPGGTGGTHQDAPSGEDLWSEELTEP
PGEPGQEEPWPEEPLPEEPWPDEGHERAGTGSAGTAPAGTAPAGTAPAGTAPAGTASLGT
ASASALTATGAAYDGPAYDGAGPVPVPGELTVTAAAAGPVPDTGAEGRLHLPSQRAEPLT
PEDARAIASWDRDLEALTGELRRARESVREVALPASLSASQLLRLAADPDGFARELARPM
PRPPQRAARRGTRFHAWVESRFEELPLPMLGPDELPGGDPDEAGIEDERELVALKEAFER
TPYAGRVPYRLEAPVQVTLAGRVVRGRIDAVYRDETTGAFEIVDWKTGRGRDADPLQLAV
YRLAWAEQHGLPPESVAAAFVHVRTGEVVRPGGLPGRAGLERILRDDHPPYGDSGHGGPP
SGAPGTGAPGTGDRGIGDGHRVR
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcacgcatcaccgaccccgagcagctcaaggagctgctcggcgtcccgttcacc
ccggagcagacggcctgcatcaccgcgccgcccgcgccgcaggtcatcgtggccggggcg
gggtccgggaagacgacggtgatggccgcccgggtggtgtggctggtgggcaccggccag
gtgcagcccgagcaggttctcgggctgaccttcaccaacaaggccgcggcagagctcgcc
gagcgcgtccgcaccgccctcgtccgggccggggtcaccgacccggacgtgatcgacccg
gacgacccgccgggtgaaccgagcatctccacctaccacgccttcgccggacgcctcctc
acggaccacggcctccgcctcggactggagccggcctcccggctgctcgccgacgccacg
cgctaccagcttgccgcacgggtgctgcgcgaggctccgggcccctaccccgccctgacc
aagtccttcccctccctggtcggcgatctgctcgcgctcgaggccgagctggccgaacac
ctcgtggcgcccggggaactccaggcccacgactccgcgctgctgcgcgaactggagggc
gtcgaactgggcaacgccgacctgcgcaaggtccccgaggcggccgccgcccgccgggaa
ctgctcgatctcgtcgtccgctaccgcgaggccaagcggtcccgcgacctcctcgacttc
ggcgaccagatcgcgctctccgctcggctcgcgctcacccgccccgaggtcggccgcatc
ctgcgcgacgagttccgggtggtcctgctcgacgagtaccaggacacgtccgtggcccag
cgcctgctgctcgccggtctgttcggccggggcgccgccccggacggcacaccggccgag
ggcgcgggccatcccgtgacggcggtgggcgacccctgccaggcgatctacggctggcgc
ggcgcgtccgtcgccaacctcgacgacttcccccggcacttcccccgcgccgacggccgc
cccgccacccggttcaccctgagcgagaaccgccgcagcggcggccgactcctcgacctc
gccaacggcctggccgagccgctgcgcgcccgccacgaaggcgtcgaggcgctccgtccc
gcccccggggccgagcgggacggatcggtgcggatcgcgctgctgccgacccacgcggag
gagatcgagtggctcgccgactcgatcgcccatctcgtccgcacgggcaaggagcccggc
gagatcgcggtgctgtgccgcaccgcgggcgacttcgccgagatccagggcgcgctcgtc
gcccgggatgtccccgtggaggtcgtcggactctccgggctgctgcacctgccggaggtc
gccgacctggtcgcggtctgcgaggtgctccaggacccgggcgcgaacgcctcgctggtc
cgcctcctcaccgggccgcgctggcgcatcggcgcccgggacctggccctgctcggtcgc
cgggcgcgcctgatggtccaccgccccggtgccggggaggcggacgccgaccagcggctc
gcggccgccgtcgagggcaccgacccggccgaggtcgtctcgctcgccgacgccctcgac
accttcctcgagccggccggaccggacgacggcctgccgttctccgccgaggcccgggtc
cgcttcgcccgtctcgccaccgaactgcgcgacctgcggcgttccctggcggatccgctg
atggacgtcctccaccgcgtcctcgccaccaccggcctggacgtggagctcgccgcctcg
ccgcacgccctggccgcccgccgccgcgaaaccctcgcgggcttcctcgacatcgccgcg
tccttcgcctccctcgacggcgaggcgaccctgctggccttcctcggcttcctgaggacg
gccgagcagtacgagaagggcctcgacaacgcgctgccaggcggcgagaacacggtgaag
gtgctcaccgcccacaagtccaaggggctggagtgggacgtcgtcgcggtgcccggtctg
gtcgccggacagttccccagcacccgctcccgtgagtcctggacctcccaggccaaggtc
ctgccccatgagctgcggggcgacgcggccaccctgcccggcatcacctcctgggacgcg
aagggcctccgtgccttcaaggaggagatgaaggcgcatcagcacacggaggaactgcgg
ctcggctatgtgacgttcacccgcccccgctcgctgcttctcggctcggcgcactggtgg
ggccccacccagaagcgccgccgcggcccgtcggcgttcctggaggcgctgtacgaccac
tgcgccgcgggcttcggcgagatcgaggcatgggccgaggaaccggaggagggtgccgag
aacccggcgctgcacaccgcggcggcggagcaggcgtggccccttccgctggatcccacg
gcgaccgcgcgccgccgggaggccgcgggcacggtgctggcccatctggcgtcgatgacc
ggcgccgaagccgcggcggcgccggggtggtcccgggccgtgtccggggacgccccttcc
gcccggcccggcgaccgcgagggggtctggcgcgacggatcggcgccgggcggaaccggc
ggcacccaccaggacgcaccgtccggcgaggacctctggtccgaggagctcacggagccc
cctggcgagccggggcaggaggagccgtggccggaggagccgctgcctgaggagccctgg
ccggacgagggccacgagcgcgccggcaccgggtccgccggcaccgcgcctgccggcacc
gcgcctgccggcaccgcgcctgccggcaccgcgcctgccggcaccgcgtccctcggcacc
gcgtccgcgtccgctctcacggccaccggggccgcctacgacgggcccgcgtacgacggg
gccggtcccgtgccggtgcccggcgaactcacggtcaccgccgccgcggccggtcccgtg
ccggacaccggcgctgagggccgcctccacctgccctcccagcgcgctgaacccctcact
cccgaggacgcccgggccatcgcctcctgggaccgcgatctcgaagcactcaccggcgag
ctccgccgcgcccgcgagtccgtgcgagaggttgccctgccggcgtcgctgtcggcgtcc
cagctgctgcggctcgccgccgacccggacggcttcgcgcgggagctggcacgcccgatg
ccccgtccgccccagcgcgcagcccgccggggcacccgcttccacgcctgggtggagtcc
cgcttcgaggaactgccgctgcccatgctggggccggacgaactgccgggaggcgacccg
gacgaggccggtatcgaggacgagcgcgagcttgtcgcgctcaaggaggcgttcgagcgc
acgccctacgccggccgtgtcccgtaccggctggaggcccccgtccaggtcaccctggcg
ggcagggtcgtcaggggccggatcgacgcggtctaccgcgacgagacgacgggcgccttc
gagatcgtggactggaagaccggccgcggccgcgacgccgatccgctgcagctcgccgtc
taccgcctcgcctgggccgagcagcacggcctcccgcccgagtcggtggccgcggcgttc
gtccatgtgcgcaccggcgaggtcgtccgcccgggcggactgcccggcagggcgggcctg
gagcggatcctcagggacgaccacccgccgtacggcgactccgggcacggtggccccccg
tccggcgctccagggaccggcgctccagggaccggcgaccgcgggatcggtgacggccac
cgcgtccggtga
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