Streptomyces tirandamycinicus: DDW44_20825
Help
Entry
DDW44_20825 CDS
T06843
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stir
Streptomyces tirandamycinicus
Pathway
stir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DDW44_20825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stir03400
]
DDW44_20825
Enzymes [BR:
stir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DDW44_20825
DNA repair and recombination proteins [BR:
stir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DDW44_20825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWI30947
UniProt:
A0A2S1SXF4
LinkDB
All DBs
Position
complement(4685365..4686249)
Genome browser
AA seq
294 aa
AA seq
DB search
MTPITEVEGRRLALSNLEKVLHPATGTTKGEVLHYYATIADAILTHLRDRPLSFLRYPDG
PEGQLFFTKNPPPGTPDWVEVADVPRSSRETGEQVVVQDLPSLMWAANLVVEFHTPQWRT
DRPALADRMVLDLDPGAPATVVECCRVALWLRERLAADGLDAYAKTSGSKGLHLLVPLDP
APSAEVSAYAKSLAVEAEAELGGLVVHRMARALRPGKVFVDHSQNAAAKTTATPYTLRAR
TEPTVSAPVTWDEVEGCGSPEDLVLRLGDIPGRLDRHGDLLAPLADPAAAGVLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccatcaccgaggtggaggggcggcgtctggccctcagcaatctggagaaggtc
ctccatccggccaccgggaccaccaagggcgaggtgctgcactactacgccaccatcgcg
gacgcgatcctcacgcatctgcgggaccggccgctgtccttcctgcgctaccccgacggc
cccgaggggcagctgttcttcaccaagaacccgccccccggcacacccgactgggtggag
gtcgccgacgtgccgcgctcctcccgggagaccggtgagcaggtcgtcgtccaggacctg
ccctcgctgatgtgggcggcgaacctggtcgtggagttccacaccccgcagtggcggacg
gaccggcccgccctggccgaccggatggtcctcgacctcgaccccggtgcccccgccacc
gtcgtggagtgctgccgggtggcgctgtggctgcgggaacggctggccgccgacggcctg
gacgcgtacgcgaagacctccgggtcgaaggggctgcacctgctggtgccgctggacccg
gcaccctcggcggaggtctcggcgtacgccaagagcctggccgtggaggccgaggcggag
ctcggggggctggtggtgcaccggatggcccgcgccctgcgcccggggaaggtcttcgtc
gaccacagccagaacgccgcggccaagaccacagccacgccgtacaccctgcgcgcccgc
accgagccgaccgtgtccgcacccgtcacctgggacgaggtcgaggggtgcgggtcaccc
gaggacctggtcctccgtctgggcgacatcccgggcaggctcgaccggcacggggatctg
ctcgcgcccctggccgacccggcggcggcgggtgtgctgccgtga
DBGET
integrated database retrieval system
