Streptomyces tirandamycinicus: DDW44_22960
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Entry
DDW44_22960 CDS
T06843
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stir
Streptomyces tirandamycinicus
Pathway
stir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDW44_22960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stir03019
]
DDW44_22960
Messenger RNA biogenesis [BR:
stir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DDW44_22960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AWI31320
UniProt:
A0A2S1SY30
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Position
5182397..5184082
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AA seq
561 aa
AA seq
DB search
MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGV
DLILPDFTTLVDRLDDVEAIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGRREDVGPFDCEFVAVNHSIPDALAVAIRTPAGLVVHTGDFKMDQLP
MDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPAERDISNVLRGVFANARKRIIVAS
FASHIHRVQQILDAAHEYGRKVAFVGRSMVRNMGIARDLGYLRVPSGLVVDVKTLDDLPD
DKVVLICTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLSRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGALTGIPKD
HIVIAEDGVVVDLVDGRARISGKVQAGYVYVDGLSVGDVTEASLKDRRILGEEGIISVFV
VVDSTTGKIVGGPHIHSRGSGIDDGAFDAVIPRIEEAVQKSAADGVAEPHQLQQLIRRTI
GKWISDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcccgaactcggcgctccgccgaagctccccaagggtggcctgcgc
gtcacaccgctcggcggtctcggtgagatcggccgcaacatgaccgtcttcgagtacgac
ggccggctcctgatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcgtc
gacctgatcctgccggacttcaccaccctggtggaccggctcgacgacgtcgaggccatc
gtgctcacgcacggccacgaggaccacatcggcggggtgccctacctcctccgcctcaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgtccgtacaccctggaagtcgcggaggggcggcgcgaggacgtcggt
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacccccgcggggctggtcgtgcacacgggcgacttcaagatggaccagctcccg
atggacgggcgcctgacggacctgcacgcattcgcacgtctgagcgaggagggcatcgac
ctcctgctgtccgactccacgaacgccgaggtacccggcttcgtaccggccgagcgggac
atctccaacgtactgcgcggggtcttcgcgaacgcccggaagcgcatcatcgtcgccagc
ttcgccagccacatccaccgggtgcagcagatcctggacgcggcccacgagtacggccgc
aaggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctcggg
tacctcagggtgccgtccgggctcgtcgtggacgtcaagacgctcgacgacctgcccgac
gacaaggtcgtgctgatctgcaccggatcccagggcgagccgatggcggcgctgtcccgg
atggccaaccgggaccaccagatccggatcgtgcagggcgacacggtgatcctcgcgtcg
tcgctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacgggctcagccgctgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaggaacctgatgccggtccacggc
gagtggcgccacctccgcgccaacgccgagctcggagcgctgacgggtatccccaaggac
cacatcgtgatcgccgaggacggggtggtcgtcgacctggtcgacggcagggccaggatc
agcggcaaggtccaggccgggtacgtctacgtggacggtctctccgtcggcgatgtcacc
gaggcctcgctgaaggaccgccgcatcctcggagaggaaggcatcatctcggtcttcgtc
gtggtcgactccacgaccgggaagatcgtgggcgggccgcacatccactcgcgtggatcc
ggaatcgacgacggggccttcgacgcggtgatccccaggatcgaggaagccgtccagaag
tccgccgccgacggagtcgccgagccccaccagctccagcagctcatccgccgcacgatc
ggcaagtggatctccgacacctaccgtcgccgaccgatgatcctgccggtggtcgtggag
gtctga
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