Streptococcus salivarius JIM8777: SALIVA_0006
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Entry
SALIVA_0006 CDS
T02089
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stj
Streptococcus salivarius JIM8777
Pathway
stj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SALIVA_0006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stj03400
]
SALIVA_0006 (trcF)
Enzymes [BR:
stj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SALIVA_0006 (trcF)
DNA repair and recombination proteins [BR:
stj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SALIVA_0006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
IstB_IS21
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCB94403
LinkDB
All DBs
Position
4962..8468
Genome browser
AA seq
1168 aa
AA seq
DB search
MANTLLDLFEKNHQLLEWRDKVTLLSRQLVMGFSGSSKAVVMASALSEQVPKILIVTSTQ
NEAEQLTGDLSAILGEDKVYSFFADDVVAAEFIFASPEKTHSRLESLNFLIDKEASGVLV
TSLVGTKLHLPNPKVYKDSRINLALGEEHDLEALSKHLTHIGYQRVEQVLSPGEFSRRGD
ILDIYELTAELPYRLEFFGDEIDGIRQFDSDSQKSLDNLEHIIVSPADDIILTREDYQRA
EKALESAVSKAEGPHKAYLEEVLSVTIDGYRHKDLRKFLSLFYDKAYTLFDYLPKGTPVF
IDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYLVDSFKTLRNYQPASFFSNFHKG
LGNLKFDKLYQFTQYPMQEFFNQFPLLVDEIHRYTKNKATVILQVGSEKQLKSLKETLEE
YDLDLPLSSFGDLIPHKPQLVLGNLSNGFYFADEKLVLVTEREIFHKKVKRRARASHVSN
AERLKDYNELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYLTIQYQDAATISLPVEQIE
SLSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFAFSPDD
DNQRDFEDDFAYAETEDQLRSIKEIKTDMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVN
DGKQVAILVPTTVLAHQHYLNFKERFENHAVEVDELSRFRSKKEQNETIENLAKGRIDII
IGTHRLLSKDVKFSDLGLLVIDEEQRFGVKHKEKLKELKARVDVLTLTATPIPRTLHMSM
LGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGGQIFYVYNRVETIDQKVS
ELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTIIETGIDISNVNTLFIEN
ADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIAM
RDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAINKRQGKTQVRRKGNAEFNLQIDAY
LPSDYISDERQKIEIYKRIREIENQKDYQDLQDELIDRFGEYPDQVAYLIEIGLVKAYLD
AAFAELVERKNDTIIVRFEKASLKFFLTQDYFEAISKTHLKAKISDNQGKVEITFDVRNK
KDYEILEELKIFGQTFMEIKERKEKKEA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctaataccctattagatctttttgagaagaatcatcaattgcttgagtggcgtgat
aaagtaaccttattgagtaggcagttggtcatgggattttctggttccagcaaggcagtt
gtcatggcatctgccctttctgagcaggttcctaagattctaatcgttacttcaacacaa
aatgaagctgagcaactaacaggagatttatcagctatcttaggagaggataaggtttat
tctttttttgcagatgatgtagtagctgcagagtttattttcgcttcaccagaaaagacc
cattctcgtcttgaaagtcttaattttttaatagataaagaggccagtggggttttggtc
acgagtttagttgggactaagttacatttgcctaaccctaaggtttataaagactctcgt
attaacttagcactaggggaagaacatgatttagaggctctcagtaagcatctgactcat
attggataccaaagggtagagcaggttctctcacctggtgagtttagtcgtaggggcgat
attttagatatttatgaactgactgcagaactcccctaccgtttagaattttttggagac
gagattgatggtattcgtcagtttgatagcgatagtcagaaatctttagacaatttagag
catattatcgtatctccggcagatgatattatcttaacaagagaagattaccaacgtgct
gagaaggccctagaaagtgcggtctcaaaggcagaaggtcctcataaggcttaccttgag
gaggttctgtcggttacgattgatggttaccgtcataaagatttacgtaagtttttgtct
ctcttttatgataaagcttacaccttatttgactaccttccaaagggaactcctgtattc
attgatgattttcaaaagatagtggaccgccatggacgtcttgagttggaagtggctaat
cttttaactgaggatcttcatcagggcaagtctctgagtcatctaaattacttagtggat
tcatttaagactttacgtaactatcagccagctagtttcttttcgaattttcataaggga
ttgggaaatcttaaatttgataagttgtatcaattcacgcaataccctatgcaagagttc
tttaaccagttcccacttctagttgatgaaatacatcgctataccaagaataaggcaaca
gttattttacaagtggggtctgagaagcagctcaaatctttgaaggaaaccttggaagaa
tatgatttagatttaccccttagtagttttggagatttgatccctcataagcctcagtta
gtcttaggaaacttatccaatggtttttactttgcggatgaaaagcttgttcttgtcact
gaacgtgagatttttcataaaaaagtaaaacgtcgtgcgcgtgccagtcacgtttccaat
gcagagcgtctcaaagattacaatgaacttgaaaaaggtgattatgttgtacaccagact
catggtatcggtcaatttaaaggtattgagactattgagattaaaggggtgcatcgtgac
tacttgaccatccaatatcaggatgctgcaacaatttctctacctgttgagcagattgag
agtctctctaagtatgtgtcagcggacgggaaagagcctaaaattaataaactcaatgat
gggcgtttccaaaagactaaacaaaaagtaagcaagcaagtagaggatattgctgatgat
ctcttaaaactttatgctgagcgtagtcaacttaaaggttttgctttttcaccagatgat
gataaccaaagggatttcgaagatgattttgcctatgctgagacagaggatcaattgcgt
tctatcaaggaaattaagacagacatggagtcagacaaacccatggatcgtctcttggtg
ggtgatgttggttttggtaagacagaggtagctatgcgtgctgccttcaaggcagtcaat
gatggaaagcaagttgctatcctagttcctacaacagttcttgcccatcagcattattta
aattttaaagaacgttttgaaaatcatgctgttgaggtagatgaactcagtcgttttaga
agtaaaaaagagcaaaatgagactattgaaaatttagctaaagggcgtattgacattatt
atcggtacccaccgcctgctgtccaaagatgttaagttttctgacttaggcttgctagta
attgatgaagaacaacgttttggcgtgaagcataaagagaaacttaaggagttgaaggct
agggttgatgtacttacgctaactgcgacacctattcctcgtacgcttcatatgtctatg
ttaggtattcgtgatttgtcgattattgagacagcacctaccaaccgttatccagttcaa
acttacgttatggaaaccaatcctggtcttattcgagaagcgatattaagagagatggac
cgaggcggccagattttttatgtttataatcgtgttgaaaccattgatcaaaaagtttct
gaactacatgagctggtccctgaagcacgtatcggatttgttcatggtcagatgagtgag
gttatgttggagaataccctcttggatttcttgaatggtgattacgatgttttggtagca
acgactattatcgagacagggattgatatctccaacgttaatacgctctttattgagaat
gcagatcatatgggcttatctactctttatcagttgagaggtcgtgtggggcgtagtaat
cgaattgcttatgcctatctcatgtatcgtcctgacaaagtgttgacggaagtttctgag
aagcgattggatgctattaagggctttacagaactgggatcaggtttcaaaattgccatg
cgtgatttatcaattcgtggtgccgggaacattcttggtgcttctcaaagtggattcatc
gattcagtcgggttcgaaatgtactcacaactcttggaagaggctatcaataaacgtcaa
ggtaaaactcaagttcgccgtaaaggaaatgcagagttcaatcttcagattgatgcttac
ctcccttctgactatatttctgacgagcgccaaaaaattgagatttataagcgtattcga
gaaattgagaatcagaaagactatcaagaccttcaagatgagcttattgaccgctttgga
gaatatccagaccaagttgcctatctcattgagattggtctggttaaggcctatttggat
gctgcctttgcagaattagtcgagcgtaagaacgatactattattgttcgtttcgaaaaa
gcctctcttaaattcttcttgactcaagactatttcgaagccatctctaaaacgcattta
aaagcaaaaatcagtgataaccaagggaaagtagagattacttttgatgttcgtaacaag
aaagactatgagattcttgaagaattaaagatttttggacagacatttatggaaatcaaa
gaacgtaaagaaaaaaaagaagcttaa
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