Streptococcus salivarius JIM8777: SALIVA_1935
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Entry
SALIVA_1935 CDS
T02089
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stj
Streptococcus salivarius JIM8777
Pathway
stj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SALIVA_1935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stj03021
]
SALIVA_1935 (rpoC)
03400 DNA repair and recombination proteins [BR:
stj03400
]
SALIVA_1935 (rpoC)
Enzymes [BR:
stj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SALIVA_1935 (rpoC)
Transcription machinery [BR:
stj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SALIVA_1935 (rpoC)
DNA repair and recombination proteins [BR:
stj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SALIVA_1935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
CCB96230
LinkDB
All DBs
Position
complement(2064657..2068295)
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPTKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKETPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLL
KQVDLEAEIAELKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVLPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
LMAIELFKPFVMREIVAREYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLLLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFKDIDEAVMAYRNGYVHLHSRVGI
AVDSMPDKPWKENQLHKILVTTVGKILFNSIIPAEIPYLQETTNENLTDSTPDKYFLEPG
QDIQTVIDSLEINAPFKKKNLGNIIAETFKRLRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTKKSVKNPTTGEVIVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCNTRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVVPFTARMKVEVGDE
VHRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGVPATSRPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKTIPAGTGMARYRNIEPLSVNEVEVIENI
AVDEAIVESSED
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacactagcttcaccaactaaggtc
cgttcatggtcttatggtgaagttaagaaacctgaaacaatcaactaccgtacgctcaaa
ccagaacgcgaaggtctcttcgacgaagtgatctttggtcctactaaagactgggaatgt
gcgtgtggaaaatacaaacgtatccgttataaaggtatcgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaggttcgtcgtgaacgtatgggtcacatcgagttgaaagcacca
gtatcacacatctggtacttcaagggaatcccttctcgtatgggattgactttggatatg
agtcctcgtgcgcttgaagaagttatctacttcgcagcttacgtggttatcgatccaaag
gaaacaccacttgaaccaaaatctctcttgacagaacgtgaatatcgtgaaaaattgcaa
gagtatggacatggttcatttgtcgctaaaatgggtgcagaagctatccaagatctcttg
aaacaagtggatttggaagctgaaattgctgaactcaaagaagagttgaagacagcaact
ggtcaaaaacgtgttaaagctgttcgtcgtttggacgttcttgatgccttctataagtct
ggtaacaaaccagaatggatggttcttaacatcttgccagtattgccaccagaccttcgt
ccaatggttcaattggatggtggacgttttgcggcatctgacttgaacgatctttatcgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgccccaggtatc
atcgtgcaaaacgaaaaacgtatgttgcaagaagcggtagatgcccttatcgataatgga
cgtcgtggtcgtccaatcactggaccaggtagtcgtccacttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
ggacgttccgttatcgccgttggtccaacacttaaaatgtaccaatgtggtgtgccacgt
ttgatggccatcgaacttttcaaaccatttgtgatgcgtgaaatcgttgcgcgtgaatac
gcaggtaacgtgaaagccgctaaacgtatggttgaacgtggcgatgaacgtatttgggat
attcttgaagatgttatcaaggaacacccagtacttcttaaccgcgcacctactctccac
cgtttgggtatccaggcctttgaaccagtcttgattgatggtaaggcccttcgtcttcac
ccattggtatgtgaggcctacaatgccgactttgacggtgaccaaatggccatccacgtt
ccattgtctgaagaagctcaagctgaagcacgtttgctccttcttgcggctgaacacatc
cttaaccctaaagacggtaaaccggtcgtaacgccatctcaggatatggttcttggtaac
tactacttgactatggaagaagaaggccgtgagggtgaaggtatggtcttcaaggatatt
gatgaggcagttatggcttatcgtaatggttatgttcacttgcatagccgtgtaggtatt
gcagtagacagcatgcctgataaaccttggaaagaaaaccaacttcacaagattttggtt
acaactgttggtaagattctctttaactcaatcatcccagcagaaattccatatcttcaa
gaaacaacaaatgagaacttgacagatagtacaccagataagtacttccttgaaccaggt
caagatatccaaacagttattgatagtttggaaattaatgcaccattcaagaagaaaaat
cttggtaacatcatcgctgaaaccttcaaacgtcttcgtacaactgaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccactcaacacttgctggtttgacagtgggt
atcgccgatatcccagttatcgataataaacaagaaattatcgatgctgctcaccaccgt
gttgaagaaattaacaaggccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gctgttacaacaacatggcgtgaagcgaaagaagcccttgaaaaacgtctgattgagaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctctcaacttgccggtatgcgtggtttgatggccgctcctaacggacgtatcatg
gaattgcctatcctttcaaacttccgtgaaggtttgagcgttttggaaatgttcttctct
actcacggtgcgcgtaaaggtatgaccgatacggcccttaagacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcatccgtgaagacgactgtgga
acagaccgtggtcttctcatccgtgcgattactgatggtaaagaagttacggaaacactt
gaagaacgtcttcaaggtcgttacactaagaaatcagttaagaatcctacaacaggtgaa
gtaatcgtaggtccagatactttgattactgaagacatggctgctgctattgtcaatgct
ggtgttgaagaagtaactatccgttcagtctttacatgtaacacacgtcatggtgtctgc
cgtcactgttacggtatcaacttggcaacaggtgatgcggttgaagttggtgaagcagtt
ggtactatcgccgctcaatctatcggggaacctggtacacagcttactatgcgtaccttc
cacaccggtggggtagcctcaaacaccgatatcacacagggtcttccacgtatccaggaa
atctttgaagcacgtaaccctaaaggggaagcggttatcactgaagttaagggtactgtt
attgaaatcgaagaagatgctgcaacacgtactaagaaagtcttcgttcaaggtaagact
ggaatgggtgaatacgttgttccatttacagctcgtatgaaagttgaagttggtgacgaa
gtacaccgtggtgcggccttgacagaaggttcaatccaacctaaacgtctccttgaagta
cgtgataccttgtcagttgaaacttatcttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggtgacaaacacgtcgaagtaatggttcgtcaaatgcttcgtaaa
gtacgtgttatggatccaggtgatacagatctccttccaggtacacttatggacatttct
gacttcacagatgctaacaaggatattgttatctctggtggtgttcctgcaacatctcgt
ccagtccttcttggtattactaaagcctcacttgaaacaaattcattcttgtcagcggct
tccttccaagaaacaacacgtgtccttacagatgcagctatccgtggtaagaaagaccat
ctccttggtcttaaagaaaatgttatcattggtaagactatccctgctggtacaggtatg
gctcgttaccgtaacattgaaccactttcagttaacgaagttgaagttattgaaaacatt
gctgttgatgaagcaattgtggaatcatctgaagactaa
DBGET
integrated database retrieval system
