Streptococcus parauberis: STP_0958
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Entry
STP_0958 CDS
T01504
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stk
Streptococcus parauberis
Pathway
stk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STP_0958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stk03019
]
STP_0958
Messenger RNA biogenesis [BR:
stk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STP_0958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
AEF25406
LinkDB
All DBs
Position
complement(1019374..1020846)
Genome browser
AA seq
490 aa
AA seq
DB search
MSDIKVIALGGVREYGKNFYLVEVNESMFILDAGIKYPENEQLGVDLVIPNLDYVIENKD
KVQGVFLTHGHADAIGALPYLLSDVSVPVFGSELTIELAKLFVKGNNNTKKFNNFHVVDS
ETEIEFKDGLVSFFKTTHSIPESLGIVIGTDQGNIVYTGDFKFDPAARKSYETDLGRLAE
IGKEGVLALLADSANATSNVQIASESEVGEEMNNVIGDADGRVIVAAVASNLVRIQQVLD
AAVAHSRRVVLTGTDVENIVRTAIRLKKLMIVDERLLIKPKDMNKYDDNELVILEAGRMG
EPINSLQKMAVGRHRYVQIKEGDLVYIVTTPNVSKEAMLARVENLVYKAGGSVKLITQNL
RVSGHANGRDLQLLINLMKPKYLFPVQGEYRDLAAHAVVAEEVGVFPEDIYIMKRGDIMV
LNPDGFLHEGGVPASDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKKKNNYFQS
KSQYTRIRLC
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattaaagtaatcgccttaggtggagttcgtgaatatggtaagaacttctat
ttggtcgaagttaatgagtcaatgtttattttagatgctggtattaagtatccagaaaac
gaacaattaggtgtggatttggttattcctaatttagattatgtgattgaaaataaagat
aaggttcagggtgtatttttaacgcacggccatgctgatgcaataggtgctttgccttat
ttattatcagatgtctcagtacctgtatttggttcagaattaacaattgaattagctaaa
ttatttgttaaaggaaacaataacactaagaaatttaataatttccatgttgtagacagc
gaaactgaaattgaatttaaagatggtctcgtttctttctttaaaacaacacattcgatt
ccagaaagtttaggaattgtcattggcacagatcaaggtaatattgtctatactggggac
tttaaatttgatcctgcagctcgcaagtcttacgaaactgatttaggcagattagctgaa
attggtaaagaaggtgtcttggcattattagctgactctgcaaatgcaacaagcaatgtg
caaattgccagtgagtcagaagttggcgaagaaatgaataatgtcattggggatgctgat
ggtcgcgttatcgtggcagcagtggcctcaaacttagttcgtattcaacaagttttagat
gcagcagttgcgcatagtcgtcgcgttgtcttgactggtacagatgttgagaacattgtt
cgtacagctattcgtttgaaaaaattgatgattgtcgatgaacgactcttgattaaacca
aaagatatgaataaatacgacgataatgaattggtcatcttagaagctggtcgtatgggc
gagccgattaacagtttacaaaaaatggcagttggtcgtcaccgttatgtgcaaatcaaa
gaaggtgatttggtctatatcgtcacaactccaaatgtttccaaagaagcaatgttggcg
cgtgttgaaaaccttgtttataaagcagggggcagtgtgaaactaattacacaaaatcta
cgcgtttctggacatgcaaatggtcgtgatttacaacttctaatcaatttaatgaaacca
aaatatcttttccctgttcaaggtgaatatcgtgatttagctgcacatgcagtcgtcgct
gaagaggttggtgtctttcctgaagatatttatatcatgaaacgaggcgatattatggtc
ttgaatcctgatggcttccttcatgaaggtggtgttccagccagtgatgtgatgattgat
ggtaatgcaattggtgatgtcgggaatattgttcttagagatcgaaaagtattgtcagaa
gatggaatttttatcgttgtcattactgttagcaaaaagaaaaacaattatttccaaagc
aaaagtcaatacacgaggattcgtttatgttaa
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