Streptococcus thermophilus LMG 18311: stu0081
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Entry
stu0081 CDS
T00213
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase, (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
stl
Streptococcus thermophilus LMG 18311
Pathway
stl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
stu0081 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stl03019
]
stu0081 (pnpA)
03016 Transfer RNA biogenesis [BR:
stl03016
]
stu0081 (pnpA)
Enzymes [BR:
stl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
stu0081 (pnpA)
Messenger RNA biogenesis [BR:
stl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
stu0081 (pnpA)
Transfer RNA biogenesis [BR:
stl03016
]
Prokaryotic type
tRNA degradation factors
stu0081 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_2
KH_2
OB_RRP5_4th
SPATA25
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AAV59810
UniProt:
Q5M6F9
LinkDB
All DBs
Position
91583..93808
Genome browser
AA seq
741 aa
AA seq
DB search
MAKQTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATANFFPLQVN
YEEKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDE
NASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGT
KEAINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADL
KAEIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEIL
EQMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLA
PMSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPS
VEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV
LTDIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVI
ESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQI
FSSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWK
HTEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEKNEDGENGEEHRHCCCSHHK
PDHHNESVEAPKKSDESETKE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacaaacttttgagatgacctttgaaggacgcccacttgttgtggaagtggga
caggtagccaagcaggctaatggtgccgttgtagtacgttatggagatacaaccgtattg
tcagtagctgttatgtctaaaaagatggcaactgcaaatttctttcctttacaggttaat
tatgaggaaaaaatgtatgcggctggtaagttcccaggaggctttagcaagcgtgaggga
cgaccttcgactgatgccactttgactgctcgtcttattgaccgtcctattcgtcccatg
tttgcggagggttttcgtaacgaagttcaagtcattaatactgttctctcttatgatgag
aatgctagtgcgccaatggccgctatgtttgggagttctttagcactttctatttcggat
attcctttcaatggtccaattgctggggttcaagtggcttatgcagcagaagatttcatc
atcaacccaagtgcatcagataaagaagtttcacatttagacttgatagtggcaggtacc
aaggaagccatcaatatggtagaagcaggtgctcaggaattgtcagaggacatcatgttg
caagcacttttgaagggacatgaagctattcaagagttggttgatttccaaaattatatt
gttgcggctgttggtaaggaaaaggctgaggttgaactgttccaagtggatgctgatttg
aaggctgaaattgaagcagtttattatgatcagttagctaaggctgttcaggtggaagaa
aaactggcgcgtgaggcagcaaccaaggctgttaaagaagaggtcctcgcttcttatcaa
gaacgttttgcagaagatgaagataaggaaaccattctacgtgatgtggtagaaatcctt
gagcagatggaacatgctgaagtgcgccgtctgattacagaagacaagattcgtcctgat
ggtcgtcgtgtggatgaaattcgtcctttggatgctgaaattgactttctgccaaatgtt
catggatcaggtctctttacacgtgggcaaacccaggccttatcagtcttgactttagcc
cctatgagtgatacacaactcgttgatggtttggatccagagtataagaaacgtttcctt
caccactacaatttccctcagtattcggtgggtgaaacagggcgttacggtgcaccaggc
cgtcgtgaaattggtcacggagctttaggtgaacgtgcccttgctcaagttcttccaagc
gttgaagagtttccatatgctatccgtttggtagctgaagtcttggagtcaaatggttct
tcttcacaggcttctatttgtgcaggcactttggctcttatggctggtggggtgccgatt
aaggcacctgttgcgggaattgccatgggtcttatttcagatggaaccaactacactgtt
ctaaccgacattcaaggtttagaagatcattttggtgatatggactttaaggtggctggt
acacgtctaggtattacagctcttcagatggatattaagatttcaggaattacacctgct
attcttgaggaagctttagctcaagctaaggtggcacgttttgaaattcttgatgttatt
gagtcagcgattgctgaaccacgttcggaattggccccaacagctcctaagatcgatagt
attcagattcctgttgacaagattaaggttgtcatcggtaagggtggtgaaaccattgac
aagattatcgctgagacaggtgtcacaattgatatcgatgaagaaggactcgttcagatt
ttctctagtgatcaggatgctattgaccgtgctaaaacaatcatctctgaccttgtacgt
gaagctaaggttggcgaggtctacaccgtaccagttgtgcgtattgaaaagttcggtgcc
tttgtccacctcttcaataagactgatgccttagtccacatttcagaattagcttggaaa
cacactgagcatgttgaagatgtggttaaggttggggatatggtaaccgttaaaattatc
aaaatcgatgaaaaaggtcgtgttgatgcttcaatcaaaaccttgcttcctaaacctgaa
aaaaatgaagacggggaaaatggagaagagcatcgtcactgctgttgttctcatcataaa
ccagaccatcataatgaaagtgtggaagcaccgaaaaaaagtgatgaatcagaaacgaaa
gaataa
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integrated database retrieval system
