Streptococcus thermophilus LMG 18311: stu1224
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Entry
stu1224 CDS
T00213
Symbol
recJ
Name
(GenBank) single strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stl
Streptococcus thermophilus LMG 18311
Pathway
stl03410
Base excision repair
stl03430
Mismatch repair
stl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
stu1224 (recJ)
03430 Mismatch repair
stu1224 (recJ)
03440 Homologous recombination
stu1224 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stl03400
]
stu1224 (recJ)
DNA repair and recombination proteins [BR:
stl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
stu1224 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
stu1224 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
stu1224 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAV60858
UniProt:
Q5M3Y5
LinkDB
All DBs
Position
complement(1076760..1078970)
Genome browser
AA seq
736 aa
AA seq
DB search
MITSTYDWKINTKEPDAGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLHD
PYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRF
TDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPE
AYAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGRLDDPNPAIEL
LTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIV
AGRIMEQISQTVVVLNIEDGLARGSARSLESINIFHALDDHRDIFTAFGGHAGAAGMTLP
EENLTQLSDILCSYVYDNDIDTGAKNTLNLDEELQLGELSLDTIRSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLS
VNVWNGQTTLQLMLADVRVDNVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSE
TELKEWFDGKEFQAIYFKNRIKEAYYLTGYGTREQFARLYKTIYQFPEFDVRYKLDDLSH
YLKIDKILLIKMIQIFDELGFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYNQEQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgattacatcaacgtatgattggaaaataaacacaaaagagccagatgctggctttttt
aaacttgctaaagaacatggactggtaaaaacagcagccaagattgcctatgaacgtggc
attaggacagaagaggcacttgaagactttctaaaggcagatttatcgcaccttcatgat
ccttatctgcttcatgatatggataaggcagtggctagaatccgtcaggctattgaaaat
tatgaacaaatcttagtatatggagattacgatgcggatggtatgacgtcagcctcgatt
gtcaaagaagcccttgaaatgatgggagctgaagctcgagtatacttgccaaaccgtttt
acagatggttatggaccaaacgaaagtgtctataagtatttcattgagcaggaaggtatt
tcactcatcattacagtggataatggggtagctgggaatgaggctatcgcttatgcgcaa
gagcaaggtgtggatgttatcgtcacagaccaccatagcatgccgtcacagcttccagaa
gcttatgccattgttcatccagaacatccaggcgctgattatccctttaagtatttggca
ggttgtggagtagctttcaaaatagcaacggccctcctcgagaccataccaacagagatg
ttggatttggtagctatagggactattgctgatatggttagcctgaccgatgaaaatcgt
attatggttaaggttggacttgaaattctcaagactactgagcgtattgggcttcaagaa
ttgctccgtatttccgaagtagacctaacaacaatttctgaagaaacagtggctttcaaa
ctagcccctcaactcaatgccttaggacgtttagacgatccaaacccagctattgaacta
ttaaccggatttgacgatgaggaagcgcaagccattgctctggaaatcaatgccaaaaat
gaagaacgtaaggaagttgttcaaaacatctttgatgaagccatgagcatggtagacttg
gataaaccagttcaggttttggctaaggaaggctggcatcctggtgtactcggcattgtt
gctggccgcatcatggagcaaatcagtcagacagtagtggttttaaatattgaagatggc
ttggctagggggtcagctcgtagtttggaatctatcaatatcttccatgcacttgatgac
cacagagacatctttactgcatttggagggcacgctggagcagctggtatgacccttcca
gaggaaaatcttactcaactctcagatattttatgtagttatgtctacgataatgacatt
gatacgggtgccaaaaatacgcttaatttagacgaggagctacaactcggtgagcttagc
ttggataccataaggagcctcgaaaaactagcaccttttggtatggataataaaaagcca
gtcttttggctacatgatattaccgttactcaagctagaactatggggcaaaatggagct
catcttaagtttaaggttaagcaaggcaaggctagttttgatgttgtcgcctttaacaaa
gggcatctgcttcaagaatttcagcaagctcaggggttggaattagcagtgacgctgtcc
gttaatgtatggaatggccagacaacactacagctcatgttggcagatgtgcgcgtggac
aatgttcagttatttgattttcgctcaaaaaatatggtactacctgagggcctaccaact
gtagaagaggcctcagacgaagcaactgcagttgtcctcgacaccctaccgaattcagag
acggaattaaaagagtggtttgacggtaaggaattccaggccatttattttaagaatcgc
attaaggaagcctattatctgacaggctatggaactagagagcaatttgcaaggctctat
aaaaccatttatcaattcccagaatttgatgtgcgctataaattagatgacctcagtcat
tatcttaagattgataaaattcttctcatcaagatgattcaaatttttgatgaattgggc
tttgtcactattgataatggtgtcatgacagttaataaagaggctggaaaacgtgatatt
gaggaaagcaagattttccaggaccttaaacgtcttgtcaagttccaagaactcatggct
ttgggaacaccacaggaaatttatgattggctctacaatcaggagcagtag
DBGET
integrated database retrieval system
