Streptococcus thermophilus LMG 18311: stu1488
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Entry
stu1488 CDS
T00213
Symbol
rpoD
Name
(GenBank) DNA directed RNA polymerase sigma 42 protein
KO
K03086
RNA polymerase primary sigma factor
Organism
stl
Streptococcus thermophilus LMG 18311
Pathway
stl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
stl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
stu1488 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stl03021
]
stu1488 (rpoD)
Transcription machinery [BR:
stl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
stu1488 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DprA_WH
DBD_HTH
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AAV61092
UniProt:
Q5M3E3
LinkDB
All DBs
Position
complement(1311082..1312191)
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AA seq
369 aa
AA seq
DB search
MVTKKQNTAFNVQVADFIRNHKKAGTAIDDEITEKLVIPFVLDADGIDDLLERLTDGGIS
ITDKDGNPSSKYVVEAPKPEELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEKKL
AIAVENGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQL
DEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRS
KQLKDFIED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggtaacgaaaaaacaaaatacagcatttaacgttcaagtcgctgatttcattcgtaat
cacaaaaaagctggtacagcaattgatgatgaaatcacagaaaaactagttatcccattt
gttttagatgctgatgggattgatgaccttttggaacgtttgacagatggtggtatctct
atcactgataaagatggaaatccttcatctaaatatgttgttgaggcaccaaaaccagaa
gagcttacagacgaggagcttcttggttcaaactcagctaaagtcaatgaccctgttcgt
atgtacctcaaagagattggggtagtgcctctcttgagtaacgaagaggaaaaaaaattg
gctatcgctgttgaaaatggtgatttggaagctaaacaacgtttggcagaagccaacctt
cgtttggtagtctcaatcgctaaacgctatgtcggacgtggcatgcagttcttggacttg
attcaagagggtaacatggggcttatgaaagccgttgataaatttgactactcaaaaggt
ttcaagttttcaacttatgcgacatggtggattcgtcaagcaatcactcgtgccatcgca
gaccaagcacgtactatccgtatcccagttcacatggttgaaactatcaataaattggta
cgtgagcaacgtaacctcttgcaagagttgggacaagacccaacacctgagcaaattgct
gagcgtatggatatgacaccagataaggttcgtgaaatccttaagattgctcaagaacca
gtctcacttgaaacacctatcggtgaagaggatgacagccatttgggtgattttatcgaa
gatgaagttatcgaaaatccagtagattacacaactcgtgtcgttcttcgtgaacaattg
gatgaggtgcttgatacccttacagaccgtgaagaaaatgttctacgtctccgtttcggt
cttgatgatggtaagatgcgtaccttggaagatgttggtaaagtcttcaacgttactcgt
gaacgtattcgtcagatcgaagctaaagcccttcgaaaattacgccatccaagtcgcagc
aaacaacttaaagactttattgaagactaa
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