Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM0188
Help
Entry
STM0188 CDS
T00065
Symbol
ligT
Name
(RefSeq) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stm03016
]
STM0188 (ligT)
Enzymes [BR:
stm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
STM0188 (ligT)
Transfer RNA biogenesis [BR:
stm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
STM0188 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-GeneID:
1251706
NCBI-ProteinID:
NP_459193
UniProt:
Q8ZRQ5
LinkDB
All DBs
Position
complement(217751..218281)
Genome browser
AA seq
176 aa
AA seq
DB search
MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSSDKQRAL
AQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ
PFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQGRTRYAELQRWTLGE
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagccaaaacggctgttttttgcgattgacttacccgacgacgcgcgcgcgcaa
attatcgcctggcgcgccgcccattttgcgtctgaagacggacgccccgtggcagcggcg
aacctgcacctgacgctggcctttttaggcgacgtcagtagcgataagcagcgcgcgctt
gcgcaactggccggacgaattcgacagccgggctttacgctacatctggatgacgccggt
cagtggctgcgttcgcgcgtggtgtggctggggatgcgccagccgccgcgcgggttgttg
cagttggctaatatgctgcgcgcgcaggccgcccgcagcggttgttaccaaagcccgcag
ccttttcacccgcatattacgctgctgcgcgacgccagccatacggtggctatcccgccg
ccgggcttttgctggtcatttccggtcacgtcgtttgcgctttacgcctcttcgtatggg
caaggccgtacccgctatgccgagctgcagcgctggacgctgggcgaataa
DBGET
integrated database retrieval system
