Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM0939
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Entry
STM0939 CDS
T00065
Symbol
ybjD
Name
(RefSeq) homology with RecF protein
KO
K07459
putative ATP-dependent endonuclease of the OLD family
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
STM0939 (ybjD)
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Gene cluster
GFIT
Motif
Pfam:
DUF2813
OLD-like_TOPRIM
AAA_15
AAA_21
AAA_29
AAA_23
SMC_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
1252458
NCBI-ProteinID:
NP_459916
UniProt:
Q8ZQE6
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Position
1015863..1017521
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AA seq
552 aa
AA seq
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MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDF
WFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSLCEDDFHRIFYRLEGECGA
DGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVE
VTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAED
GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQ
GFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMF
SRVVWLARGRAD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgattctcgaacgcgttgaaatagtaggatttcgcggtatcaaccgactgtcgttgatg
ctggagcaaaacaacgtgctgattggggaaaacgcctggggcaaatccagcctgctggat
gcgctgactctgttattgtcgccagaactcgatctctaccattttgtccgtgaggatttc
tggtttccgcctggcgacataaaaggacgcgagcatcacctgcatattattctgactttt
cgcgaaacgcagccagggcggcatcgggtacgtcgttatagagcgctggaagcatgctgg
tcgctttgcgaggatgattttcaccgtattttttatcggctagagggcgaatgcggcgcc
gatggcagcgtgatgacgctgcgcagttttctcaatagcgatgggcagccattactggtg
gaaaatattaacgatcaggtgcgccacctggttcgtctgatgccagtgctacgtttgcgc
gatgcgcgctttatgcgacgtattcgcaacggtacggtgcccaatgtgccggatgttgaa
gtcacggcccgacagctggattttctggcgcgtgagctggcgacccggccgcaaaattta
accgacgggcagattcgtcagggactgtccgcgatggtgcaactgcttgaacactatttc
tcagagcagggcgcaggacaggcgcgtcaccgactcatgcgccggcgttcgcaaaatgag
cagcgtagctggcgctatctggatattattaatcggatgatcgacaaaccgggcagccgg
tcgcatcgggtgatcctgctggggcttttctccacgctgttacaggcgaaagggacgctg
cggttacataaagacgcacgaccattactgctggtggaagatccggaaacccgtttacat
cccattatgctttcagtcgcctggcaattgctcaatctgttaccgctacagcggatagcg
acaaccaactcaggcgaactgctttcgctaacgccggtggaacatgtcgtacggctggtg
cgcgaatcttcccgcgtcgccgcctggcgtctgggcccgggcgggttaagcgcggaagat
ggacggcgcatcgcctttcatatccgctttaatcgcgcgtcgtcgctgtttgcgcgttgc
tggctactggtggaaggcgagacggaaacctgggttattaatgagctggcgcgtcagtgt
ggacatcattttgatgcggagggcattaaagtcattgagtttgctcagtctggcctgaaa
ccgctggtgaagttcgcccgccgtatgggaatcgagtggcatgtcctggtggatggcgac
gaagcggggaaaaaatatgccgcgacggtccgcagtctgcttaataacgatcgggaagaa
gaacgcgaacatctcacggcgttgcctgcgctggatatggaacattttatgtatcgtcag
ggctttgccgatgtttttcaccgggttgcgcaacttccgcctaatgtgccgatgaatacc
cggaaaattatcactaaagctatccaccgctcgtcaaagccggatttggcgattgaagtc
gcgatggaagccgggcggcgcggaattgacgccgtgccgccgctgttcagaaagatgttc
tcgcgcgtggtttggctggcgcggggccgggcggattag
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