Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM1641
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Entry
STM1641 CDS
T00065
Symbol
hrpA
Name
(RefSeq) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stm03019
]
STM1641 (hrpA)
Enzymes [BR:
stm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STM1641 (hrpA)
Messenger RNA biogenesis [BR:
stm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STM1641 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
PhoH
AAA_16
ResIII
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
1253159
NCBI-ProteinID:
NP_460600
UniProt:
Q8ZP95
LinkDB
All DBs
Position
complement(1731328..1735230)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQ
VALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLA
EIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW
HWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIW
SFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEK
VRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatctacgttgacgcttcaggtgttacagcagcggctggatgcactgatg
ctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgtaaagaaagtaaaaaatcct
gatgcgcaacaggccattttccagacgatggcgaaagaaattgaacaggctgcggcgcag
gtcgccctccgcgaagcggcgcgcccctcaatcacttatccgcaaaatttgcctgttagc
cagaagaaacaggacattctggaagcgatccgcgatcatcaggtggtgatcgtggcaggg
gaaaccggttccggtaaaaccacccagttgccgaaaatttgtatggaactgggacgcgga
attaaaggacttattggacatactcaaccgcgtcgtctggcggcgcgcaccgtcgctaac
cgcattgccgaagagttgcaaacggagcctggcggctgcatcggctataaagttcgtttc
agcgatcatgtcagtagcaacaccatggtcaaactgatgacggacggtatcctgctggcg
gaaatccagcaggacaggctattgatgcagtatgacaccctcattattgatgaagcgcat
gaacgcagcctgaatattgacttcttgctcggctatctgaaagaacttctgccgcgtcgc
cccgatctgaaagtgattattacctctgcgaccatcgacccggaacgcttctcgcgccac
tttaataacgcgccgattatcgaagtctctggccgaacgtatcccgtagaagttcgttat
cgccccattgtggaagaggctgacgacactgaacgcgatcagctacaggcaattttcgat
gctgtcgatgaactggggcgtgaaagtcccggcgatattctgatttttatgagcggagag
cgggaaatccgcgataccgccgacgccctgaacaagctgaacttacggcataccgaagtg
ttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgcgttttccagtcgcacagc
ggacgccgtatcgtgctggcgactaacgtggcggaaacctcgctgacggtgccgggtatc
aagtatgtgatcgatcctggcactgcgcgcatcagccgctacagctaccgcactaaagtg
cagcgcctgccgattgaaccgatctcacaggcttccgccaaccagcgtaaagggcgttgc
gggcgcgtatcggaagggatttgcattcgtctgtattcggaagatgactttttgtcacgt
ccggaatttaccgacccggaaattctacgtaccaacctggcgtcggttattttgcagatg
accgccctggggctgggtgacattgccgccttcccgtttgtcgaagcgccggataagcgc
aatattcaggatggcgtgcgtttgttggaagagctgggggcgattaccgccgacgaacag
caaacggcatataagctgacgccactgggccgacaattatcccagttgccggtcgacccg
cgcctggcgcgtatggttctggaagcgcaaaaacatggctgtgtgcgcgaagcgatgatc
attacttccgcactctctattcaggatccgcgcgagcgcccagtggataagcagcaggct
tccgatgagaaacaccggcgtttccatgataaggaatccgattttctggcgtttgttaac
ctgtggaattacctcggcgagcaacaaaaggccctgtcgtcgaatcaattccgccgtctg
tgtcgcaccgactatctgaactatttacgcgtgcgtgagtggcaggatatctatacccaa
ctgcgtcaggtggtaaaagaactggggattccggtaaacagcgaacccgcagagtaccgg
gaaattcacgttgcgttgttaacgggactgttgtcgcatatcgggatgaaagatgccgat
aaacaagagtacaccggcgcgcgtaacgcccgattctctattttccccggttccggttta
ttcaaaaaaccgccgaaatggacaatggtcgcagaactggtggagaccagccgcctgtgg
gggcgcatcgctgcccgcattgagccagaatgggtggaaccggtagcccagcacctgatt
aaacgttcatatagcgaaccgcactgggagcgggcgcaaggcgcggtgatggcgacggaa
aaggttactgtctacggtctgccgattgtcgccgcgcgcaaagtgaattacagccagatt
gacccggcgttgtgtcgcgagttgtttatccgccatgcgctggtggagggggactggcaa
acccgtcacgccttcttccgtgagaatctaaaattgcgtgcggaagtcgaggaacttgag
cacaaatctcgccgccgcgatatcctggtggatgacgataccctgtttgagttttatgac
cagcgtattagccatgacgttatttccgcccgccactttgatagttggtggaaaaaaatc
agccgcgagacgccggatctgctcaactttgaaaaaagtatgctgattaaagaaggcgcg
gaaaaaatcagcaaactggattacccgaacttctggcaccagggcaatcttaagctgcgt
ttgagctatcagtttgaaccgggcgcggatgctgacggcgtgaccgtccatattccgttg
ccgctacttaaccaggttgacgagagcggttttgaatggcagatcccagggctgcgccgt
gaattagttattgcgctgattaaatcgttgccaaaaccggtacgtcgcaactttgttccg
gcgccaaactatgctgaagcgtttttaggtcgcgtaacgccgctggagctgccgctgctg
gacgctctggagcgtgaactgcgccggatgaccggcgtcacggtcgatcgggaagactgg
cattgggatcaggtgcccgagcatctgaaaatcacgtttcgcgtggtgaatgacaaaaac
aagaaactgcaggaagggcgttcgctcgccgagcttaaaaatgcgctgaaaggcaaagtg
caggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatctgg
agtttcggcgagctgccggaaagctacgaacagaaacgcggtaattataaagtgaaggcg
tggccggcgttagtggatgagcgtgacagcgtcgctatcaaattgtttgataatccgctg
gaacaacaacaggcgatgtggtgcggtttacgccgtctgttgttgctcaatattccttca
ccgattaagtatctgcatgagaaattgccgaataaagccaagctggggctgtactttaac
ccgtacggcaaagtactggagttgattgatgactgtatcgcctgcggggtagataagctg
atagatgccaacggcggaccggtgtggagcgaagcaggtttcaccgcgctgcacgaaaag
gtacgcgccgagctgaatgatactgtggtggatatcgcgaagcaggtcgagcggatcctg
acgaccgtattcaatatcaataagcgtctgaaagggcgggtggatatgagcatggcgttg
gggctttccgatatcaaggcgcagatgagcggtctggtataccgtggttttgtgactggc
aacggctttaaacgtctcggcgatacgctgcgttatctgcaggcaattgaaaagcggctg
gagaaactggctgtcgatccgcaccgcgatcgggcgcaaatgctgaaagtcgaaagcgtc
cagcaggcgtggcaacaatggataaataaattgcctccagcgcgtcgcgaagatgatgat
gttaaagagatccgttggatgattgaagaactgcgtgtcagttatttcgcccaacagctc
ggtacgccttatcctatttccgataagcgtattttacaggccatggatcagattacggcc
taa
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integrated database retrieval system
