Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM1817
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Entry
STM1817 CDS
T00065
Symbol
rnd
Name
(RefSeq) RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stm03016
]
STM1817 (rnd)
Enzymes [BR:
stm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
STM1817 (rnd)
Transfer RNA biogenesis [BR:
stm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
STM1817 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-GeneID:
1253336
NCBI-ProteinID:
NP_460773
UniProt:
Q8ZP09
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All DBs
Position
complement(1914016..1915143)
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AA seq
375 aa
AA seq
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MNYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPLGI
SDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLSWGFAS
MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAAL
DECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDMAVNFVVR
EENLWAVARYMPGSLGELDSLGLSGSEIRFHGKTLISLVAKAQALPEEALPEPLLNLMDM
PGYRKAFKAIKALVAEVSASHHVSGELLASRRQINQLLNWHWKLKPQNGQPELISGWRAE
LMEEKLTLLLQEYPL
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgattgaaacggacgatgcgctggcgagcctgtgtgaggctgtccgc
gcatgtccggctattgctttagatacggaatttgtccgtacccgcacctattacccgcag
ttaggattgatccagttatttgacggggcaaatgtcgccctgatcgatccgctcggcatc
agcgactggtcgccgttaaaagcggtgttgcgcgatacgggaatcaccaaatttctgcac
gcgggtagcgaagatctggaagtatttctgaatgcgtttggcgaactgccggaacccctg
attgatacgcaaattctggcggcgttttgcgggcgtccgctgtcgtggggttttgcgtcg
atggtagaagagtatacgggcgtggcgctggacaaaagcgagtctcgtaccgactggtta
gcccggcctttaagcgaacgtcagtgtgaatacgcggcggcggatgtctggtatctgtta
ccgatcgccaaaaagctgatgattgaaactgaagccgcaggatggctgcctgccgcgctt
gatgagtgtcggttgatgcagcagcgccgtcaggagattcaggcgccggaagaagcatgg
cgggatatcaccaatgcctggcaactgcgtactcgccagttagcctgtctgcaactttta
gctgactggcggctacgtaaggcgcgtgagcgcgatatggcggtgaactttgttgtgcgt
gaagaaaatctgtgggcggtcgcgcgttatatgccgggcagtctcggtgagctggatagc
ctggggctttccggcagcgagattcgttttcatggcaagacgttgatatcgctggtggcg
aaagcacaggcgctaccggaagaggcattgccggaacccctgttgaatctgatggacatg
ccgggctatcgcaaagcgtttaaagccatcaaagcgctggtggcggaggtgagcgcgtcg
catcacgtcagcggcgagctactggcatcgcgtcggcagattaatcagttgcttaactgg
cactggaaattaaaaccgcaaaatgggcaaccggaattgatttccggctggcgcgccgaa
ctgatggaggagaagttaactcttctgttgcaggagtatccgctttaa
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