Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM3280
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Entry
STM3280 CDS
T00065
Symbol
deaD
Name
(RefSeq) cysteine sulfinate desulfinase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Pathway
stm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STM3280 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stm03019
]
STM3280 (deaD)
03009 Ribosome biogenesis [BR:
stm03009
]
STM3280 (deaD)
Enzymes [BR:
stm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STM3280 (deaD)
Messenger RNA biogenesis [BR:
stm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STM3280 (deaD)
Ribosome biogenesis [BR:
stm03009
]
Prokaryotic type
rRNA helicases
STM3280 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-GeneID:
1254803
NCBI-ProteinID:
NP_462193
UniProt:
Q8ZLT4
LinkDB
All DBs
Position
complement(3446192..3448132)
Genome browser
AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKIQPSAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREERPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcccttaccgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcgccaacc
cgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccttgtacggcggtcagcgttatgacgtgcagttacgcgccctgcgt
caggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcacttaaaacgcggc
accctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaaatgctgcgt
atgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggtcatcagacc
gctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctggaagcggaa
gactttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaagtagcagaa
gcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaaccaggcgctg
cgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatcgctaccgac
gttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactacgatattccg
atggactccgagtcctacgttcaccgtatcggtcgtaccggccgtgcgggtcgcgccggt
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggtaaacgccgt
ctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctggatcagtac
cgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggatctcgaaacg
ctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgatcctgccgccggat
gcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccgcgcgatcgt
aatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaagttcgtcat
atcgtgggcgctatcgctaacgaaggcgacatcagcagccgttacattggcaacattaag
ctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaagtgctccag
cacttcacgcgtacccgcattctgaacaagccgatgaatatgcagctgttgggtgatgcg
gttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggcgaacgtcgt
gaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgatggtcgtcgc
ttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctaccggtcgccgt
cgtttcggcggtgatgcgtaa
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