Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM3519
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Entry
STM3519 CDS
T00065
Symbol
rtcB
Name
(RefSeq) putative cytoplasmic protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stm03016
]
STM3519 (rtcB)
Enzymes [BR:
stm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
STM3519 (rtcB)
Transfer RNA biogenesis [BR:
stm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
STM3519 (rtcB)
Prokaryotic type
tRNA splicing ligases
STM3519 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-GeneID:
1255042
NCBI-ProteinID:
NP_462422
UniProt:
Q8ZLH9
LinkDB
All DBs
Position
complement(3681374..3682591)
Genome browser
AA seq
405 aa
AA seq
DB search
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRD
VGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggatctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcatcgcgat
gtgggcgcatggggaaacccgcccgccaacgttaatgaaaaatgggcgcaactggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcac
ctgggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggca
caacaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaaccgagcgccctcgatatggacgagatcaactgccaccataactat
gtgcaaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcg
gcgcggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcaaattcgtgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatatt
gatgcggtgatggcggcgcagtccgacctggttgaaatcatgtacgccctgcggcaggtg
gtgtgcgttaaaggatag
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integrated database retrieval system
