Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM4368
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Entry
STM4368 CDS
T00065
Symbol
vacB
Name
(RefSeq) putative exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Pathway
stm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STM4368 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stm03019
]
STM4368 (vacB)
03016 Transfer RNA biogenesis [BR:
stm03016
]
STM4368 (vacB)
Enzymes [BR:
stm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STM4368 (vacB)
Messenger RNA biogenesis [BR:
stm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STM4368 (vacB)
Transfer RNA biogenesis [BR:
stm03016
]
Prokaryotic type
tRNA degradation factors
STM4368 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
MetOD2
Motif
Other DBs
NCBI-GeneID:
1255894
NCBI-ProteinID:
NP_463229
UniProt:
Q7CP94
LinkDB
All DBs
Position
4611079..4613517
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK
KDARKAKKPSAKTQKIAAATKAKRAAKKKAAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaactgaatattgaaggcgaagagcagcttgaagccttgcgtcgccgcctgcgc
gcgatggagcgcgacggacaactggtctttacccgccgccagtgctatgcgctgccggaa
cgcctcgacctgctgaaaggcaccgtgatcggtcatcgtgatggttacggtttcttacgt
gtcgaaggccgcaaagacgatctgtatctttccagcgagcaaatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgccgatcgtaaaggtcgccgcgaagcgcgt
atcgtccgtgtactggtaccgaaaaccagtcagatagtcgggcgttatttcaccgatgcg
ggcgtcggctttgtggtgccggacgacagccgcctaagcttcgacattcttatcccgcca
gaagacgtcatgggcgcgcggatggggttcgtggtcgtggttgaactgacccaacgtcca
actcgccgtactaaagcggtagggaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggtatggcggttgatatggcgctgcgtacccatgaaataccttacatctggccgcaggcg
gtagagcagcaggtcgccgggctgaaagaagaggtgccggaagaggcgaaagtcggtcgt
gtcgatctgcgcgatttgccgctggtcactattgatggcgaagatgcccgtgactttgac
gacgcggtttactgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gacgtgagctattatgtacggccgccaacgccgctggatcgcgaggcgcgcaatcgcggc
acgtcggtttacttcccgtcacaggttgtcccaatgttgccggaggtgctctccaacggt
ctgtgttcgctaaacccgcaggttgacaggctgtgtatggtctgtgaaatgaccatctcg
gcgaaaggtcggctgaccggctacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggatctgcgtgaacaatat
gcgccgctggtgaagcatattgaagagctgcacaacctctacaaagtgctggataaagcg
cgtgaagagcgcggggggatctcgtttgagagcgaagaggcgaagtttatctttaacgcc
gaacgtcgcattgagcgtatcgaacagacccagcgtaatgacgcgcataagcttatcgaa
gagtgcatgatcatggcgaatatctcggcggcgcgctttgtcgaaaaagctaaagagccg
gcgttattccgtattcatgataagcccaccaccgaagcgatcacctcattccgctccgta
ctggcggagctggggttggagctgccgggcggaaacaaaccggaaccgcgcgattatgcc
gaactgcttgaatcgattgccgaccggccggacgccgaaatgctgcaaactatgctgctg
cgttcaatgaagcaggcgatttacgatccggaaaaccgcgggcactttggcctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgctatccggatctttctttgcaccgc
gccattaagtacctgctggcgaaagagcaagggaacaagggcaacaccacagaaacgggc
ggttatcactactcgatggaagagatgttgcagctcggtcagcactgttcgatggcggaa
cgccgcgctgatgaagcgacgcgtgatgtctccgactggctgaaatgtgactttatgctg
gatcaggtaggcaacgtctttaagggcgtgattgccagcgtcaccggtttcggcttcttt
gtccgtcttgatgaactgtttatcgatgggctggtacacgtttcctcactggataacgat
tactatcgcttcgatcaggtagggcaacgtctgattggcgagtccggcgggcagacatat
cgcctgggcgaccgggtcgaggtacgcgtcgaagcggtgaatatggacgaacggaaaatt
gactttagcctgatctccagcgagcgcgcaccgcgtaacgtcggcaaaacggcgcgtgaa
aaagcgaaaaaaggtgaaagtaaaaacgccggtaaacgtcgtcaggtaggtaaaaaagtt
aacttcgagcctgatagcgccttccgcggcgagaaaaaagcgaagccgaaagcagcgaag
aaagacgcgagaaaagcaaaaaagccatcggctaaaacgcagaaaatagccgcagcgacc
aaagcgaagcgtgcggcgaagaaaaaagcggcagagtga
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