Streptococcus thermophilus ND03: STND_1121
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Entry
STND_1121 CDS
T01978
Name
(GenBank) Metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stn
Streptococcus thermophilus ND03
Pathway
stn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STND_1121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stn03019
]
STND_1121
Messenger RNA biogenesis [BR:
stn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STND_1121
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADQ63164
LinkDB
All DBs
Position
complement(1048796..1050457)
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AA seq
553 aa
AA seq
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MSDIKIIALGGVRENAKNLYIVEINDSIFILDAGLRYPENEQLGVDFVIPNLDYLVENKD
RIQGIFLTHGHADAIGALPYILQDAKVPVFGSSLTIELAKLFVKNAGVNKFNNFHVIDSE
TEIEFDDAVVSFFKTTHSIPESMGIVLGTDRGNIVYTGDFKFDQAARPYYKTDLGRLAEI
GREGVLALLSDSANATSTEQTASEAEVGQEIDQVIADADGRVIIAAVASNLVRIQQVFDS
AAEHGRRVVLTGFDVENIVRTAIRLKKLTVEHEKLIVKPKDMNKFEDHELIILENGRMGE
PIDGLQKMAVGRHRYVQIKDGDLVYIVTTPSIAKEAAVARVNNAIYKAGGAVKMITQNLR
VSGHANARELQLMLNLLRPQYLFPVQGEYRELQAHAELALEVGILPENIYIVKRGDIMHL
SEDQGFLHEGTVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNKKERKIVSK
ARVNTRGFVYVKKSRDILSESADIVNATVENYLAGDSFDWGELKGAVRDDVAKFLFDQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatattaaaattattgccctaggtggagtgcgtgaaaatgctaagaacctctat
attgttgaaattaacgactccatctttatcttggatgctggtctaaggtatcctgaaaat
gaacaattaggtgttgactttgttatccctaatttagattatttggttgaaaataaagac
cgtatccagggaattttcttgacgcatgggcacgctgacgccattggtgccctaccttat
atcttgcaagacgccaaagtaccagtctttgggtcatcacttactattgagttagctaag
ctttttgtaaaaaatgctggcgttaataaattcaataatttccatgtcattgactcagaa
actgaaattgaattcgatgatgcagtggtctcattctttaagacaactcactctatccca
gaatcaatggggattgttcttgggacggaccgaggcaatattgtctatactggtgatttc
aagtttgaccaagctgctcgcccttactacaaaactgatttaggtcgcttggctgaaatc
ggtcgagaaggtgtcttggccctcttgtcagactcagcaaatgcgacaagtactgaacaa
acagcttcagaagcagaagttggccaagagattgaccaagttattgccgatgcagatgga
cgtgttattattgcagcagttgcctcaaacttggttcgtattcaacaagtctttgattca
gctgccgaacatggacgtcgcgttgttcttacaggttttgacgttgaaaatattgttcgt
acagctatccgtcttaagaaattgactgtggagcatgagaagctcattgttaaaccaaag
gatatgaacaagttcgaagaccacgagttgattattctcgaaaatggacgtatgggagag
ccaatcgacggtcttcaaaaaatggcagttggccgtcaccgttatgttcaaatcaaagat
ggggacttagtttatatcgtaaccacaccaagtattgctaaagaagcagcggtcgcacgc
gtaaacaatgctatctataaggctggtggggctgttaagatgattacacagaatcttcgt
gtatctggacatgccaatgctcgtgagcttcaattgatgctgaatcttcttcgtccacag
tatcttttcccagtccaaggggagtaccgtgaacttcaagctcatgctgagttagccctt
gaagttgggatccttccagaaaacatctacattgttaagcgtggagatatcatgcactta
tcagaggaccaaggtttccttcatgaaggtactgtcccagctggtgatgttatgattgat
ggtaatgctatcggtgatgttggaaatatcgtgcttcgtgaccgtaaggtcttgtctgaa
gacggtatctttatcgttgctattacagtcaataaaaaggagcgtaagattgtctctaaa
gcgcgtgtcaatacgcgtggcttcgtctatgttaaaaagagccgtgatatcctaagtgag
tctgctgatattgtcaatgcaactgttgaaaattacttggcaggagatagttttgattgg
ggagaacttaaaggtgcggttcgcgatgatgtggctaagttcctctttgaccaaaccaaa
cgtcgcccagcaattcttccagttgttatggaagtacgttaa
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