Streptococcus thermophilus ND03: STND_1710
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Entry
STND_1710 CDS
T01978
Name
(GenBank) mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stn
Streptococcus thermophilus ND03
Pathway
stn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STND_1710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stn03019
]
STND_1710
Messenger RNA biogenesis [BR:
stn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STND_1710
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SIS_2
Motif
Other DBs
NCBI-ProteinID:
ADQ63745
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Position
1613979..1615661
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AA seq
560 aa
AA seq
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MASKINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDY
SYIVENVDRVKALVVTHGHEDHIGGIPFLLKQANIPIYAGPLALALIKGKLEEHGLLRDA
QLYEINADTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDLTPVGEPAD
LHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFR
LQQAAEAAVKTGRKIVVFGRSMEKAIVNGVELGYIKVPKGTIIDPSEMKNYHASEILILC
TGSQGEPMAALARIANGMHRQVTLQPGDTVIFSSSPIPGNTTSVNRLINTIQEAGVDVIH
GKINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKVHADLAVDCGVPKENIFIME
NGDVLALTKDSARRAGHFNAQDIYVDGNGIGDIGAAVLRDRRDLSGDGVVLAVATVDFNS
KMILAGPDILSRGFIYMRESGDLIRDSQRILFNAIRIALKNKDASIQSVNGAIVNALRPF
LYEKTEREPIIIPMILTPDN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaatcaatctaaaacctgaagaagttggggtttatgcgattggtggtttg
ggagaaatcggtaaaaatacctatggtattgaataccaggatgaaatcatcatcgtcgat
gcgggtattaaattccctgaagatgatcttctcggtatcgattatgtcatcccggactat
tcttacatcgttgaaaacgttgaccgtgttaaggctcttgtcgttactcacggtcacgaa
gaccatattggtggtatccccttccttcttaaacaggcaaatatcccaatctatgcagga
ccacttgctcttgctcttatcaaaggaaaattggaagaacacggactactacgtgatgca
caactctatgaaattaacgctgatacagagcttactttcaaaaatatgagcgtaaccttc
ttccgcacaactcactcaattccagaacctctcggaattgtcatccatacaccacaaggt
aaaattgtttgtaccggtgactttaagttcgacctcactccagtaggtgagccagcagac
cttcatcgtatggctgcactcggtgaagaaggcgttctttgcctcctctcagactcaacc
aatgctgaagtcccaactttcactaattccgagaaggtcgttggacaatccatcatgaaa
ataattgaaggcattcacggacgtattatcttcgcctcatttgcctctaatattttccgt
cttcaacaagctgctgaggctgctgtaaaaaccggtcgtaagattgttgtctttggacgt
tctatggagaaagccattgttaatggtgttgaactaggctatatcaaagttccaaaagga
actattattgatcctagtgaaatgaaaaactatcatgccagtgagattcttatcttgtgt
accggttctcaaggggagcctatggcggcccttgcacgtattgccaatggtatgcaccga
caagtaacactacaacctggtgacaccgttatcttctcatctagccctatcccaggaaat
acaaccagcgttaaccgtttgattaataccattcaagaagcgggtgtagatgttattcac
ggtaaaatcaacaatatccatacctctggtcacggtggtcaacaagagcaaaaactaatg
cttcgcttgataaaaccaaaattcttcatgcctgttcatggtgaataccgcatgcaaaag
gtccacgcagatctcgctgttgattgtggtgttccgaaagagaatatctttatcatggaa
aatggtgatgtcttagccctaacaaaagattctgctcgtcgtgcaggtcatttcaatgct
caagacatctatgtcgatggtaatggtatcggtgatattggggcggccgttcttcgtgac
cgtcgtgatctctctggagatggtgtcgtccttgctgtcgcaactgttgacttcaattct
aagatgattctagctggtccagatattctcagtcgtggatttatctatatgcgtgaatct
ggtgatcttattcgtgatagccaacgcattctattcaacgctattcgtattgctcttaaa
aataaagacgccagcattcaatccgttaacggagctatcgtcaatgcattacgaccattc
ctatacgaaaaaacagaacgtgagccaattatcattcccatgattctcacacctgataac
taa
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