Sulfurisphaera tokodaii: STK_22620
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Entry
STK_22620 CDS
T00062
Symbol
csl4
Name
(GenBank) exosome RNA-binding subunit Csl4
KO
K07573
exosome complex component CSL4
Organism
sto
Sulfurisphaera tokodaii
Pathway
sto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STK_22620 (csl4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sto03019
]
STK_22620 (csl4)
Messenger RNA biogenesis [BR:
sto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
STK_22620 (csl4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
STK_22620 (csl4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
FtrD-like
A2L_zn_ribbon
Zn_ribbon_3
Zn_ribbon_NUD
ECR1_N_2
Zn_Ribbon_TF
HVO_2753_ZBP
Zn_ribbon_NOB1
tRNA-synt_1e
DZR
Cas12f1-like_TNB
HypA
DUF3797
Prok-RING_1
S1
C1_2
Zn_ribbon_PaaD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAB67371
UniProt:
Q96YA6
LinkDB
All DBs
Position
complement(2271738..2272307)
Genome browser
AA seq
189 aa
AA seq
DB search
MKKQGELLLPGDKLSVIEEFMAGEGTYEYEGRVYASVVGKAFYDMINRKTNSISFKKPGL
LSIKKAKYVLGIVNGMKEDSALVNIYSIEDKIISVPITAYIHISQISNKYLNSITEALKV
LDVVRAKPLNFSIPLPLTIKQKDLGVVFAKCSICGTKMIKKDEEHLRCPNCGNIETRKLA
LVMVKKGGN
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcaaggagaattactactaccaggcgataagttaagtgttatcgaagagttc
atggccggtgagggaacttatgagtatgaaggaagagtttatgctagcgtagtcggtaaa
gcattttatgacatgataaatagaaaaactaattctataagttttaaaaaacccggatta
ttatctataaagaaagctaaatacgtccttggaatagttaatggaatgaaagaggattct
gcattagtaaatatctattcgatagaagacaaaattataagtgtacctattacagcgtat
atccatatttctcaaattagtaataaatatcttaatagtattactgaagcattaaaagta
ttagatgttgtaagagcaaaaccattaaatttcagcatacctcttcctttaacaataaaa
cagaaggatttaggcgtagtttttgctaaatgttctatttgcggtacaaaaatgattaaa
aaagacgaagaacatttaaggtgtccaaactgtggtaatattgagacaagaaaattagca
ttagttatggtgaagaaaggtggaaattaa
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