Sulfurisphaera tokodaii: STK_22800
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Entry
STK_22800 CDS
T00062
Symbol
xpd
Name
(GenBank) DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sto
Sulfurisphaera tokodaii
Pathway
sto03022
Basal transcription factors
sto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
STK_22800 (xpd)
09124 Replication and repair
03420 Nucleotide excision repair
STK_22800 (xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sto03021
]
STK_22800 (xpd)
03036 Chromosome and associated proteins [BR:
sto03036
]
STK_22800 (xpd)
03400 DNA repair and recombination proteins [BR:
sto03400
]
STK_22800 (xpd)
Enzymes [BR:
sto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
STK_22800 (xpd)
Transcription machinery [BR:
sto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
STK_22800 (xpd)
Chromosome and associated proteins [BR:
sto03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
STK_22800 (xpd)
DNA repair and recombination proteins [BR:
sto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
STK_22800 (xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
PhoH
DUF4238
MCM_lid
Motif
Other DBs
NCBI-ProteinID:
BAB67389
UniProt:
Q96Y88
LinkDB
All DBs
Position
2287204..2288850
Genome browser
AA seq
548 aa
AA seq
DB search
MELRDWQKQLKDKVINAVKEGFLVALNSPTGSGKTLFSLLVGLNTKGKVIFVVRTHNEYF
PVYRDVKKIDPSLKFSFVIGKPSACPFAAKDVDTEDINCKYCEIKNAIEVKIDKSPFEKL
KELKENGIKEGFCPYYSLLESAKEADIITITYPYFFIEKYLSLLDINLEEYFIVIDEAHN
IDKVSEIEERTLSEFILSMAIKQSKSEEVRRILDRLIKELKTLTYQDEKYIKLDKVPELS
DEELSLLVDEYEELRKEAIKSKSVSRIYLGSVIRFYATYSTGNFIPFSFSNKIVLKTLEL
NQYYNLLNDENLSILLMSGTLPPKEYLEKVIGISRKILYINVEKEVKKKVTGSYQCKIAI
DVTSKYDLRSEAMWKKYSSYLLKIYYQARNHVLAVFPSYQIMEKVMSYVNVNKILENEGT
RIDDVIKIVKESRQKYIIAGVGRGKITEGVEITDNDRSLISDVVLVGVPYPPEDDYMKLL
SKKISEKLGGKEKEYLIMIPALITVKQAIGRSIRNINDTALVWLLDKRYDSLWWKKNLNC
FNSTKIRL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtggagttaagagattggcaaaagcaattaaaagataaagtaataaatgctgtcaaagaa
ggttttttagtcgcattaaactcccctacggggagtggtaaaacacttttttctctttta
gttggtcttaatactaagggtaaagtgatctttgtagttagaacgcataatgaatatttt
ccagtatatagggatgtaaagaaaattgatccttctctaaaattttcgtttgttataggt
aagcctagtgcttgtccctttgcagctaaggatgtagatactgaagatattaattgtaaa
tactgtgagataaaaaatgctatagaagttaaaatagataaatccccttttgagaaactt
aaagaattaaaagaaaatggtataaaagaagggttctgtccctattattctctgttagaa
tcagcaaaggaagctgatatcattacaataacgtacccttatttttttattgaaaaatat
cttagtttacttgacatcaacttagaagaatatttcatagtaatagatgaggctcataat
atagataaagtaagtgaaattgaggaaagaacactaagtgaatttattctctcaatggca
ataaaacagagcaagagcgaagaagtaagaaggatattagatagactcataaaagagtta
aaaactctaacttatcaagatgaaaaatatataaaattagataaagtgcctgagttgtca
gatgaggaactctcactgttagttgatgagtacgaagaattaagaaaagaggcaataaaa
tcgaaaagcgtgtctagaatctatctgggctctgtgatccgtttttacgctacgtattct
actggaaattttatacctttttctttttctaataaaattgtcctaaaaacattagagcta
aaccaatattacaacttactaaatgatgaaaatctttctattttattaatgtccggtact
ttaccaccaaaggaatacttagagaaagtaataggaatttctagaaaaattttatatata
aacgtagagaaagaagtaaagaaaaaagtaacaggcagttatcaatgtaaaatagcgata
gatgtgacttctaaatacgatctaagaagtgaagcaatgtggaaaaaatattcctcgtat
ttgttaaaaatttactatcaagctagaaatcatgtgttagcagtatttccatcttatcag
ataatggaaaaagtaatgagttatgttaatgtaaataaaatcttagaaaatgaaggaaca
agaattgatgatgttataaaaatagttaaagagagcagacaaaaatatataatagctggc
gtaggaagaggaaaaataactgagggtgtagagataacggataatgatagaagtttaatt
tcagatgtagtcttagttggtgtcccttatcctccagaagatgattatatgaaattactt
tctaagaaaatttcagaaaaactgggaggaaaagagaaagaatatctaataatgataccg
gctttaattactgtaaaacaagctataggtaggtctataagaaatataaatgatactgca
ttagtttggttactagataaacgatatgattccttatggtggaagaaaaacctaaattgt
tttaattcaacaaaaataaggctatga
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