Stomatobaculum sp. F0698: QU660_03525
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Entry
QU660_03525 CDS
T09252
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
stom
Stomatobaculum sp. F0698
Brite
KEGG Orthology (KO) [BR:
stom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stom03009
]
QU660_03525 (rlmD)
Enzymes [BR:
stom01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QU660_03525 (rlmD)
Ribosome biogenesis [BR:
stom03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QU660_03525 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
MTS
Methyltransf_25
N6_N4_Mtase
UPF0020
Methyltransf_4
PrmA
Methyltransf_15
Methyltr_RsmB-F
PCMT
Methyltransf_12
FtsJ
Methyltransf_32
Methyltransf_11
Ubie_methyltran
Saf-Nte_pilin
CMAS
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
WLD87402
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All DBs
Position
744985..746181
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AA seq
398 aa
AA seq
DB search
MKKSGAAKPAAPLRAVSDTARCPHEKRCGGCSYSALPYEEQLRKKQREAEKLLGKFCKVE
PIVAAPEPLHYRNKVTASFGFQNKKLVVGVYERDSHRVVPIDHCRIQNRTADRIIHIIRD
LAVSFRLKAYDEDLRIGTLRHVLVRTSEATGQIMVVIVTGTPIFPGSKNFVTALRKQCPE
ITTVIQNINPQKTSMVLGERDKVLYGKGYIEDELMGLTFRLSPASFYQVNAKMTEKLYET
ALSFAKLTPNDTVLDAYCGVGTIGMAASRSAGQVIGVELNKAAVRDAIANAKRNGIENIR
FFADDASDFLLRVAESGEKLDAVIMDPPRSGSTERFLESACKVKPKRIVYVSCNPETLAR
DLQLLKRWNYHCERLVPIDNFPLTEHVESVVLLTKVHN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaagcggcgcagcgaaaccagctgcgccgcttcgcgctgtctccgacacagcg
cgctgtccccatgagaagcgctgcggcggctgttcttacagcgctctgccctatgaggaa
cagcttcgcaaaaagcagagagaggcagagaaactgctcggcaagttctgtaaggtcgag
cccattgtggcggcgcccgagccgctgcactaccggaacaaggtgacggcgagcttcggt
tttcagaataagaagctcgtggtcggtgtgtacgagcgtgacagccacagggttgttccg
attgaccactgccgcatccagaatcgaacggcggaccgcatcattcacatcatccgcgac
ttggcggtttccttccgcctgaaggcctacgacgaggatcttagaatcggtacgctccgc
catgttctggttcgtacctccgaggcgaccggacaaatcatggtggtgatcgtgaccggt
acacccatcttcccgggcagcaagaactttgtcaccgccctcagaaagcagtgtcccgag
attacgaccgtgatccagaacatcaacccccagaagacgagcatggtgctcggcgagcgc
gataaggtcctctatggcaagggttatattgaagatgaactcatggggcttacgtttcgc
ctatctcctgcctccttttatcaggtgaatgcgaagatgacggagaagctctacgagact
gcgctctcgtttgctaagcttacgccgaacgacacggtactggatgcctactgcggtgta
ggaaccataggcatggcggcttcccgcagcgcgggacaggtgattggcgttgagctcaac
aaggcggccgtgcgggatgcgattgcgaacgcgaagcggaacggcatcgagaacatacgt
ttctttgcggacgatgcgagcgattttttgctgcgtgtcgcagagagcggtgagaaactc
gatgcagtcatcatggacccgccgcgaagcggcagcaccgagcgcttccttgagagcgcc
tgcaaggtgaagccgaagcgcattgtctatgtctcctgcaatccggagaccctcgcgcgg
gacttgcagctcttaaagcgctggaactaccactgcgagcgccttgtgccgatcgataac
tttccgctgacggagcatgttgagagcgtggttctgttgaccaaagtacataactga
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