Stomatobaculum sp. F0698: QU660_07825
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Entry
QU660_07825 CDS
T09252
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
stom
Stomatobaculum sp. F0698
Brite
KEGG Orthology (KO) [BR:
stom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stom03009
]
QU660_07825 (rlmD)
Enzymes [BR:
stom01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QU660_07825 (rlmD)
Ribosome biogenesis [BR:
stom03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QU660_07825 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Methyltransf_15
Methyltransf_12
Ubie_methyltran
UPF0020
Methyltrans_SAM
Methyltransf_23
N6_N4_Mtase
TPMT
Methyltransf_32
PCMT
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
WLD86393
LinkDB
All DBs
Position
complement(1711314..1712711)
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AA seq
465 aa
AA seq
DB search
MRKNDEFELKITGLSDEGLGIGKSDGFVWFVKGALPGDTARCLAMKLKKKYGFARVKTLL
QASPERVTPRCAVEQRCGGCQLQALSYEAELRLKANQVREDLLRIGEVPAERLDAVMEPI
VGMRYPSRYRNKAQVPFAAGEDGRPVAGFYAVRSHRVIPWLDCDIGAAENARILEVILAW
MERFRIAPYDEESGRGLIRRALIRKSRATQGYMLCLIVNGKELPHWEALLKELQAADRGD
AKLETLVLNTNTRRDNVILGDTVRTLYGKGYIEDSIGDIRFRISPHSFYQVNPVQTEAMY
GAALEFAALSGNETVWDLYCGIGTISLFLARQAKKVYGVEIVPAAIRDAKENAKRNGIAN
AEFFTGAAEEVLPAWQKANPDTRIDVITVDPPRKGCDETALRTMAELSPERIVYVSCNPA
TLARDIKYLRANGYELTRVRPVDNFPRTMHCEAVTLLVKSGIDEN
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagaatgatgagtttgaactaaaaattacggggctctccgatgaggggctcggc
atcggcaagtcggacggctttgtctggtttgtgaagggcgccctccccggggacacggcg
cgctgccttgcgatgaagctcaaaaagaaatacggctttgcgcgcgtgaaaacactttta
caagcttcgccggagcgtgtcacgccgcgctgtgcggtcgagcagcgctgcggcggctgc
caactgcaggcgctctcctacgaggccgagcttcgcttaaaggcgaatcaagtaagggaa
gacctgcttcgcatcggtgaagtcccggcggaacggctggatgccgtcatggaacccatc
gtcggaatgcggtacccctcccgctatcggaataaggcccaggtgccctttgcagccggc
gaggacggaagacccgttgccggcttttatgctgtccggagtcaccgcgtgattccctgg
cttgactgcgatatcggcgccgcggaaaacgcgcgcattctggaagtgatactcgcctgg
atggagcgctttcggattgccccctacgacgaagagagcggcagggggcttattcgccgc
gccctgatacggaagagccgtgcgactcagggctatatgctctgtctcattgtaaacggc
aaggaactgccgcattgggaggcgctgctcaaggagcttcaggcagcggacagaggggat
gctaaacttgagactctggtcctcaataccaacacccgtcgggacaatgtgatactcggc
gacacggtgcgcaccctctacggcaagggctatatcgaggacagcataggcgatattcgc
ttccgtatctccccgcactccttctatcaggtgaatcccgttcagaccgaggccatgtac
ggcgcggcgctcgagtttgcggcgcttagcggaaacgagactgtctgggatttatactgc
ggcatcgggaccatctccctctttttggcgcggcaggcaaagaaggtatacggcgtggaa
attgtgccggccgccatccgggacgcaaaagaaaatgccaagcgaaacggcattgcaaac
gcggaattctttaccggcgccgccgaggaagtgctgcctgcttggcagaaggcaaatccg
gacacccggattgatgtgattaccgtggacccgccgcgtaagggctgcgatgagaccgca
ctccgcaccatggcggaactatctcccgagcgcattgtctatgtgagttgcaaccccgcg
actctcgcgcgggacataaaataccttcgcgccaacggctatgagttaacgcgcgttcgc
ccggtcgataactttccgagaaccatgcattgcgaagccgttacccttttagttaagtca
ggtattgacgaaaactaa
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