Stomatobaculum sp. F0698: QU660_09750
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Entry
QU660_09750 CDS
T09252
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stom
Stomatobaculum sp. F0698
Pathway
stom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QU660_09750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stom03400
]
QU660_09750 (mfd)
Enzymes [BR:
stom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QU660_09750 (mfd)
DNA repair and recombination proteins [BR:
stom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QU660_09750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
nSTAND3
ERCC3_RAD25_C
ATPase_2
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WLD86739
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All DBs
Position
2147417..2150815
Genome browser
AA seq
1132 aa
AA seq
DB search
MSGFRNPLDGLDVYRALEEKLKKRGGPVLVTGLADAAKGQFAEAVLAAERPLKLYVTYDE
LRARELYEDLLSFGADAMFYPAKDLLFFAADVRSNELSAVRIDVRRRIAECGSGFVVTTI
DALMDKLETPERFLRRCLRIHASDRLDLGETAKQLAALGYERSAEVDGRGQFSVRGGILD
VFPVTEETPVRIELWDDEIDSMRRFDPESQRSTEGLESVHIYPAREELLGGSDSFLRYFS
GDKSLLILDEPARLLERAREVEREYLASAEGRAEGEKTAEAIVSAALLWEDLQSSATLCL
AGLDSRIPEFTIRAEFSIAAKAVASFPGNFELLIEDLRRYRRERWSVILMTPSRTRARRL
AEAFQNYELSAFCPDETEEQLPVAEPGSIMLLSGKLHRGFEYPLIRFALLAESDLFGRRK
EKKKRRKQSEQAGSHISALSELSVGDYVVHEENGLGIYRGVEKIETDGVARDYIKIEYKD
GDNFYVPATRLDAIQKYASAEAAVPRLNRLGSPEWGKTKTRVKRAVREIAKELVTLYATR
LKEKGHRYGPDTVWQTEFEELFPYAETGDQLQAIADVKADLEEGRIMDRLICGDVGYGKT
EIALRAAFKVVQEGYQVIFLVPTTILAQQHYNNFSQRLKDFPLRIDLLCRFRSAAEQKKT
LADFERGTVDILVGTHRVLSKDIKPHKLGLLIIDEEQRFGVAHKEKVKQLRKDVNVLTLT
ATPIPRTLHMSLAGIRELSVLSEPPRDRQPVQTYVMEHSDAIVREAVQRELNRGGQVYYV
CNKISRLPEIAARLAAELPEAEVAYAHGKMQEKELERIMLDFMNGEIDVLVTTTIVETGL
DIPNVNTIIIEQADHFGLSQLYQLRGRVGRSSRIGYAFLLYQRGRLLREEAEKRLRAIRE
FTELGSGIRIAMRDLEIRGAGNVLGAEQHGHMQAVGYDLYCKLLNQAVRRLTGREEEEEE
HLSASVEAEASAYISDSYVKSEEQKLDLYQRIALIQTEEDEREMQDELIDRFGDMPIEVT
NLLLIARIRASAERVRAAEVRIKRESTRVIMREDAVLDTEKLPALLSEYAGHLSVRPQRP
VEFLLTKQGTSLAEDAMLRETLALFAHFEALLPEKGRLDIDKAGEPRYKSKE
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcggttttcggaatccgctggacgggctggatgtctaccgggcgctcgaagagaaa
ctcaagaagcggggcggccctgttctggtcactgggcttgcggacgccgcaaagggacag
tttgcggaagccgtactcgcggcagagcgcccgctcaagctctatgtgacctatgatgag
ctgcgcgcccgcgagctctatgaggatctcttaagcttcggcgcggatgccatgttctat
ccggcgaaagacctactcttttttgcggcggatgtgcgcagcaacgaactgagcgccgtc
cgcatcgatgtgagacgccgcattgcggagtgcgggagcggcttcgtcgtgacgaccata
gatgcgctcatggataagcttgaaacgccggagcgctttttgcgccgttgtctccgaatc
catgcgagcgatcgtctcgacctcggcgagaccgcgaagcaacttgcggcgctcggctac
gagcggagcgcggaagtggacggacgcgggcagttttcggtgcggggcggcattttggat
gtctttccggtcacggaggagaccccggtacgcattgagctctgggacgatgaaatcgat
tccatgcgccgcttcgacccggagagtcagcgttccaccgagggcttggagagcgtacac
atttaccctgcgcgggaagaactgctcggcggcagcgactcctttttgcgctatttttcc
ggggacaagtcactcctcatactcgatgagccggcacgtcttctcgagcgtgcgcgcgag
gtggagcgggaatatctcgcgagcgccgaaggcagggccgagggcgaaaagacagcggag
gccattgtctcggccgccctcctttgggaagaccttcagagcagtgcgaccctctgcctg
gcgggcctcgacagccgcattccggagttcacgatacgcgcggaattttcaattgcggcg
aaggccgttgcgagcttcccgggtaactttgaactcttgatcgaagacctgaggcgctac
cggagagagcgctggtctgtcattttgatgacgccttcgcgcacccgtgcgcgcagactc
gcggaagcgtttcaaaactatgagctctcggccttttgtccggacgagacggaggagcag
ctgccggtcgctgagccgggatccattatgctgctcagcggcaagctgcaccgaggcttt
gaatatcctttgattcgctttgcgctccttgcggagagcgatctcttcgggcggcgaaaa
gaaaagaaaaagcggagaaagcaaagcgagcaggcgggcagtcatatctcggcgctctcg
gaactctcggtcggcgactatgtggtgcacgaggagaacggcctcggcatctaccgcggg
gtcgagaagatagagaccgacggtgtcgcgcgggattacatcaaaatcgaatacaaggac
ggcgataacttctatgtcccggcgacccgcctcgacgcgattcagaagtacgcgtcggcg
gaggcagcggtaccgcgtctaaaccgcctcgggagtccggagtggggcaagaccaagacg
cgggttaagcgcgccgtccgtgaaatcgcaaaggaattggtgaccctctacgcgacgcgg
ctcaaggagaaagggcatcgctacgggccggatacggtgtggcagaccgagttcgaagag
ctcttcccctacgcggagaccggggaccagctgcaggcgattgcggatgtcaaggcggac
ctcgaagagggacgaatcatggaccgcctgatttgcggcgacgtgggctacggcaagacc
gaaattgcgctccgcgcggcctttaaggtggtgcaggagggctatcaggtcatcttcctc
gtgccgaccaccatactcgctcagcagcactacaacaatttctcgcagcggctcaaagac
tttccgctgcgcatcgacctcctctgccgcttccggagcgccgccgagcaaaaaaagacc
cttgcggatttcgagcggggcacggtcgatatcctggtgggcacgcaccgcgtgctctca
aaggacatcaaaccccataagctgggactcttgatcatcgacgaggagcagcgcttcggg
gtcgcgcacaaggagaaggtgaagcagctgcggaaggatgtcaatgtgttgacgctgacg
gccacgccgattccgcgcaccctgcacatgagtcttgcgggcatacgagagctctccgta
ctctccgagccgcccagggaccgtcagccggtccagacctatgtgatggagcacagcgac
gccatcgtgcgggaggccgtgcagcgcgagctgaaccggggcggtcaggtctactatgtc
tgcaataaaataagccggctgcccgaaattgcggcgcggcttgcggcggaactgccggag
gcggaggtcgcctacgcgcacgggaagatgcaggagaaggagttagagcgcatcatgctc
gactttatgaacggtgagatcgatgtattggtcacgacgaccatagtcgagaccggtctg
gacattccgaatgtcaacaccatcattatcgagcaggcagatcacttcggcctctcgcag
ctctatcaactccgggggcgtgtcgggcgctcctctcgcatcggctatgcctttttgctc
taccagcgcggcaggctgctccgcgaagaggcggaaaagcgacttcgcgcaatccgcgag
ttcacggagctcggcagcggtatacgaatcgccatgcgggatctggagattcgcggcgcg
ggcaatgtgctcggcgccgagcagcacggccatatgcaggcagtcggttacgacctctac
tgcaaacttctgaatcaggcggtgcgccgcttgaccggcagagaagaggaggaagaggag
cacctgagcgcctcggtcgaggcggaggcgagcgcctacatttcggatagctatgtgaag
agcgaggaacagaagctggatctctaccagagaatcgcactgattcaaacggaggaggat
gagcgggaaatgcaggacgagctgatagaccgcttcggcgatatgccgatcgaggtcacg
aatcttttgctcatcgcacggatacgcgcttcggccgaacgtgtcagggccgccgaagtg
cgcatcaagcgggagagcacccgggtcatcatgcgggaagacgcggtgcttgacacggaa
aaactgcccgccctgctctccgaatacgccggacatctttcggtgcgtccccagaggccg
gtcgagtttttgctcacgaaacaggggacaagtcttgccgaagacgcaatgctgcgcgaa
actttggctcttttcgcgcattttgaggcgcttttacccgaaaaagggcgcttggatatt
gacaaggcgggagagcctcgctataaaagtaaagagtaa
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integrated database retrieval system
