Sphaerospermopsis torques-reginae: K2F26_14365
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Entry
K2F26_14365 CDS
T09782
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stoq
Sphaerospermopsis torques-reginae
Pathway
stoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K2F26_14365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoq03019
]
K2F26_14365
03009 Ribosome biogenesis [BR:
stoq03009
]
K2F26_14365
Enzymes [BR:
stoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K2F26_14365
Messenger RNA biogenesis [BR:
stoq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K2F26_14365
Ribosome biogenesis [BR:
stoq03009
]
Prokaryotic type
rRNA helicases
K2F26_14365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
AAA_19
Flavi_DEAD
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
QYX30132
LinkDB
All DBs
Position
3084307..3085869
Genome browser
AA seq
520 aa
AA seq
DB search
MNLTFQELGISQERVEQLERIGFTSPTNIQMQAIPQLLEGRDVVGQSQTGTGKTAAFSLP
MLEKLDVSKRAVQALVLTPTRELAMQVHDAISQFMGDDGLRVLAIYGGQSIDRQMMQLKR
GVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPEDRQTA
LFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPDTALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNGQVRWVVATD
IAARGLDVDLLSHVINFDLPDSVETYLHRIGRTGRAGKEGTAISLVQPFERRKQQAFERH
NRQSWQVLTIPTRAQIEARHIQKLKDQVSEALAGERLASFLPIISELTEKYDAQAIAAAA
LQLAYDQTRPAWLQNGVDVPDEEPTPKPKLNKRRDGDRSERNFGGDYNERSGGSRGRSWS
KSDRNGDEGRPTPKPKLRKERQERYDRHESPVLPGNQKQI
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacctttcaagaactaggcatttcccaagagcgtgttgaacaattagaaaga
attggcttcacctcacctaccaacattcaaatgcaagcgattccccaattgttagaggga
cgtgatgtggtgggtcaatcccaaacaggaacaggcaaaacagcagctttttctctgcca
atgttggaaaaattggatgtgagcaaaagagcagtacaagccttagttttaacaccgact
cgtgaattggcgatgcaggttcatgatgccatttcccagtttatgggtgatgatggtttg
cgtgttttggctatctatggtggtcagtctattgaccgacaaatgatgcagctaaaacgt
ggtgttcatgtagttgttgggacaccaggacgggtcatagacttgttggaacgtggtagt
ttaaaactcgaccaagtgaaatggtttgttttagatgaagctgatgaaatgttgagcatg
ggttttattgatgatgtgatcaaaattttgtcccaagctcccgaagatcggcaaacggct
ttattttcggcaactatgcccccatctattcgccagttggtgaataagtttttaaactct
ccggtgactgtcaccgttgagcaaccaaaagctgcacctaataaaatcaaccaagtagct
tacctcattcctcgacactggacaaaggctaaagctttgcagcctattttggaaatggaa
gatccagacacagctttaatctttgtccgcaccagacgcacagccgcagaattgaccaat
caattgcaagctgctggtcacagtgtagatgaatatcatggtgatttatcccaacaagcg
cgggaaagattattgactcgtttccgtaatggccaagtacgctgggtggtggctactgat
attgcggcacgaggtttagatgtggatctgctttcccacgtgattaactttgacttgcct
gatagtgtagaaacctacctgcaccggattggtagaactggccgcgctggtaaagaaggg
actgcgatttctttggtacaaccctttgagcgtcgtaaacaacaggcatttgaacgccat
aaccgtcaaagctggcaggtgttaacaattcctacgagagcgcaaattgaagctagacac
attcaaaaattgaaagatcaggtgtctgaagctttagcgggtgaaaggttggcttcattt
ttgcccattattagcgaattgactgaaaaatatgatgctcaggcgatcgcagcagcagct
ttacaactggcttacgatcaaacccgtcctgcttggttgcaaaatggtgtagatgttcct
gatgaagaacctactcccaaacccaaactcaacaaacgtcgtgatggcgatcgctcagaa
cgcaattttggcggtgactacaacgagcgttctggaggtagtcgtggccgttcctggtct
aagtctgacagaaatggcgatgaaggaagacctactcccaaacccaaactacggaaggaa
cgccaagaacgctatgaccgtcatgagtctcctgttttaccaggtaatcaaaaacaaatc
tag
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