Sphaerodactylus townsendi (Townsend's least gecko): 125424488
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Entry
125424488 CDS
T08213
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stow03400
]
125424488 (SPG11)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125424488 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
125424488
NCBI-ProteinID:
XP_048337717
LinkDB
All DBs
Position
LG17:5576783..5629216
Genome browser
AA seq
2427 aa
AA seq
DB search
MAAALPVLLLPLRAPPGPLARARLSRRHQALALDAAEGRELRWEEGGRRRPALLAVPGCR
DFVWENSEDRDPVADSLKLLTLSHSRELSVYEVSPKVQKCKATLVRSCTEDRLKRLIEQK
NISVPPISSLKVLSFENGRALLMLNSSIVVCLAFPGGQQEAEELEDCFFLDLSPQVLERI
VDTSFCRGVVVLLDESGWIYVFDAVDGTYLAYVDVALYQAEEQDEKNPALLSPLESLNLS
HDLSVAVITSCSGYAAAIDLDLYFREYPAHLLCKRNFDDLFVEQLKEMDEEDLRSSDYSM
TLVNRAFQTDRSWKAHLISLNETAKRVYSPNLVADVHLPWYQYCLHPEHHDCKIHKASDS
ALLQDVTYVFSNARKKDHKSTKERERRWRPIHLGGSEDCVKIECKSVTGFSALFAVSHES
EGLTLVLWDLETQDIVRSHMGKNALFVECGQEEQSCLIFSDLGLSLVLFGLTQEEFLNRL
IIHGRAGTVDSLCRLNGWGRCSIPIHALEAGLENRQLDTVDFFLKNKENLFSLSSACSLQ
DQTSKITSDFYLKSVEELKPALDLLCLAIQENDLEAQSKHFSEQLLSLALSFLNKHLCEI
FVHIEELDENLDGCVHILTSYITKLRAFMIKFPHKQSSVLSTPCNPEEDIPQVQQRQAWE
QCSPEEVIASAVLNNKLPEAQAFFRMTGNPAQKLEELTQIGLDLVYSSLQKGDVKEASKL
LTNMGFDVMKQLHKICFYTSDQPVRDFLVKVLQEERYFSEAEKKTIDFVDQVEKAYSGAS
QGNAENSQARSWGKEKDPSVHRPALDVLLNCDRDRVHNREHRVMLSWAQPWDQITREVVL
LPTRSPEELKSCNSEVLWMHLSSWHDWSSISSWIADPRSQGGSADWPALAPEALDRSTSC
SRYMRNEILDRLARKKGFAPAELEDFKRLLQRLALAGGVMQDPPPVSGYSSPGGFDFHAC
FILYCLDRGLNHLLYTYLDYYRLFSSNCPILSDQALHEAHPWFEFLVRCRDIARSRGDAE
MIFQASLANAQILIPSDQASVSTMLLEGRTLLALATTMYAPGGIDQILQNGSGGESPAQK
VDAQLFRVALAPYPKLKAALFSPPASHGSLPSDVSLYHLVQALVPFDPAKLFGWQPTNSL
ALPDVGSDLPHFSCPSLINKYAVIERLDFCYYLRHERPSFAFGTFLVQQLAKSKTPKQLV
QQAGHEAYALALSLFHIPSVAAACVCFLELLGLESLKLRVDVKVANVILSFMSRREEPEH
NSIRESLVEKLAELAKGEKTAAEELLVCLEEAVWDKIEHQNIKKTSSSARKQWAFVVQFC
RLHSLKLDTSYLKECARSDEWLPFLIEAQMYDYPPAEVLAILPDFTLPLQDHLRLAFESL
PAPLPQVGGQVSPPRLPRQEQQPGRSWGDLFHVLLQCQHQPCPWRYLLGESLQHCAPVLC
VLAACFQQEANILHCLCVWIITSLDSSTVGEVVDNTEGSVETHEWDLQDLATLWQVLLRR
QKVRTLLTGFRLFLKDSPLLTTLEVYELCLDYKNYPKAQTKLLELQASLSKLEATDEELP
PVLPAWWLKEQVSFLLELMLQQCRTQYELRRLLQIFADTDTVLPRGPDMKKLSGLCWILK
DSSISISRALLSSYTPENFSNECARILEQLQERSWFSVAQAVAEMAGLPVDHIVVQEMLQ
KLNLLKEAGHWPQKQARAEFWKSCHENFARSAVSNRTAFSFFSAQADAVSEPSDTERMSA
VQERRLLLTLAGHWLASSDPVPLNELEALERKIWLCHIAQHSLNQASGPARHPFSPEIPM
TGGLSFDALAEQFSFSKLPALSSPKYLQLEGLPSQGASQAALPAADMELLSFLIGRLLDK
GRVHEASRVCQYFSCYSRDVLLALHCRALAAGEAVLSCSHPELQAVLAAREKSQQEVVEE
EEEEAEDGDLQDGHLRRTSSRESWSFMGAPCSDDKVVDSLQALTAACVHGRNYCRQVICL
YELSKELGCSFSDISARDSRKLLRALLSSQQPDRCRRAQAFITTQGLEPELVAELVAEEV
VRELLVWSQGEGGHNQMLNPAEESQVFLQLAKLCQDHTLVGTKLLDRISSMPHGELACTT
ELLIVAHQCFSLTCHMEGITRVLQAARLLTDEHLAPNEKYGLMVRLLTGIGRYNEMTYIF
DLLHEKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHE
AAANVQLKLIESQPWEESLRDMPSLKKHLMKALTLFLDAAESYSKDFCVHHSLRCNRLTK
LITLQLHLLNTGRSTKLISLHQQDLLDCVVNLPRFYQAAIVADAYDFVPDWSEVLYQHVM
VKGDFSYLEEYKQRGLLKASTFEDVAQRLKQNPGSAAPLKNLKRLLTYCEDIYVQYKLAY
DHQLFDVVTMLLQDPQTGACLNDLLAN
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgctgcctgtgctgctgctgcccctccgcgcgccgcccggacccctcgcc
cgcgccaggctcagccggcgccaccaggccctggcgctcgacgccgccgagggccgggag
ctgcgctgggaagaaggaggccgccgccgccccgccctcctcgccgtccccggctgccga
gactttgtgtgggagaattcggaagaccgcgatcccgtggccgacagcctgaagctgctg
accctgagccacagccgcgaactttctgtgtatgaagtttccccaaaggttcagaaatgt
aaagcgacgctggtgcgtagctgcactgaggacaggctgaagaggctgatcgaacagaaa
aatattagtgtgccaccaatctcttctttgaaagtgctgtcgtttgaaaatggcagagct
ctgctcatgctcaacagctctattgttgtgtgccttgcttttccgggaggacaacaggag
gcagaagagctggaagactgttttttccttgacctgtcaccacaagttttggaaaggatt
gtggacacttccttttgcagaggtgttgttgtcttgttagacgaatcaggatggatatac
gtgtttgacgcagtcgatgggacgtatctcgcctatgttgacgttgccctctatcaagca
gaggagcaagatgagaagaacccggcgcttctgtcaccactggaatcactaaacctatca
cacgatctcagtgtcgctgtcatcactagctgttctggctatgctgccgctattgacctt
gatttatatttcagagaatatcctgcacatttactctgcaagagaaactttgacgatctg
tttgtagaacaactgaaggagatggacgaggaggacctcagaagctcagattacagcatg
accctggtgaaccgggcatttcagacagacaggtcctggaaagcacacttaatttcatta
aatgaaacagccaaaagggtttattctccaaatttggtagctgatgttcacttaccttgg
tatcagtactgcctgcatccagagcaccacgactgtaagatccataaagcctctgattct
gcccttcttcaagatgttacttatgtcttttcaaatgcaaggaagaaagatcataaaagc
accaaggaacgagaacggcggtggaggccgatacatctgggggggtcagaagactgtgta
aaaatcgaatgtaaatctgtgacaggctttagtgcattattcgccgtctcacacgagagc
gaaggactgactctggttctgtgggatttggagactcaggatatcgtgcgttctcacatg
ggcaaaaatgccctctttgtggaatgcggccaagaggagcagtcgtgtctcatcttttca
gatctcggcctctccttggttctgttcggcttaactcaagaagaattcttgaacaggctg
ataattcatggtcgggccggcactgtggattctctttgccgtctcaatggatggggaaga
tgttctattcccatacatgccttagaggctggcttggagaaccggcagctagatactgtg
gatttttttttaaagaacaaggagaatcttttcagtctctcgtcagcttgttccttacaa
gaccagacttcaaaaatcacatcagatttttatttgaagagtgttgaagaactgaagccg
gccttggacttgctttgtttggcaatccaagaaaacgacttggaagcgcagagcaagcac
ttctcggagcagctgctgagcctcgccttgtctttccttaacaaacatctctgcgagatt
tttgtccacatagaagaactggatgaaaatctagatggatgtgtgcacattttaaccagc
tacatcactaaacttcgtgcatttatgatcaagttccctcataagcagtccagcgtctta
agcacgccatgcaatcctgaagaagacataccccaagtgcagcaacgccaggcgtgggag
cagtgcagtccagaggaagttatcgccagtgctgttttgaacaacaaactgccagaagca
caggcctttttccggatgactggtaatcctgctcagaaactggaggagctgacccagatt
ggactagacctggtatacagcagccttcagaagggtgatgtcaaagaggcctccaagctc
ttaacgaacatgggatttgatgtcatgaagcagctgcacaaaatatgtttctacaccagt
gaccagcctgtccgtgacttcttggtgaaagtgttgcaggaagaacgttacttttctgag
gctgaaaagaaaacgatcgacttcgtagatcaggtggagaaggcatactcaggagcttcg
caggggaatgctgagaactcccaggctaggtcctggggaaaggaaaaggatccgtctgtc
cacaggcctgctttggatgtgttactgaattgcgaccgggatcgagttcataacagagag
cacagagttatgctaagctgggctcagccctgggatcaaatcacgcgagaggtggtcctc
ctccctacccgatccccggaagagttgaagtcatgtaactcagaagttctttggatgcat
ctgtcatcctggcacgactggagcagcatcagttcatggattgcagaccctcggtcccag
ggcggcagcgcggactggccagcactggccccggaggccctggaccgaagcacctcgtgc
agccgttacatgagaaatgaaatattggacagactggccagaaaaaagggatttgcaccg
gcagaactagaagatttcaagcgccttcttcaaaggctggctctcgctggaggagtgatg
caagatccgccgcccgtctcaggctattcatcccccgggggcttcgatttccatgcctgc
tttatcctttactgtttagaccgtgggctaaaccatctactctacacctatttagactat
tatcgtttattttcttccaattgccccattttgagtgaccaggcgcttcatgaagctcat
ccttggtttgaattcctggtgcggtgtcgagacattgccagaagccgcggagatgcagag
atgatttttcaggccagcctcgcaaatgcccagatcttgattcccagtgaccaggccagc
gtgagcaccatgcttctggaaggacggacgctgctggctctggccaccaccatgtatgct
ccaggaggcattgaccagattcttcagaatggaagtggaggagagagccctgcccagaag
gtggatgcccagctgttccgggtggccctcgctccctatcccaagctcaaggccgctctt
ttctccccacctgcctctcacggcagcttgccttctgacgtctctctgtaccaccttgtt
caggcattagttccgtttgatcctgctaaactgtttggctggcagcccactaattccctt
gccctgcctgatgttggcagcgatctccctcacttctcatgccccagtctcattaacaaa
tatgcagtgatcgagcggctggacttctgctactatttgcgacatgagcgcccctcgttc
gctttcgggaccttcttagtccagcaactggcaaagagcaaaaccccaaagcagctggtc
cagcaggccggccacgaagcctacgcactggccctctcgctcttccacatcccctccgtt
gctgccgcctgcgtctgttttttggaactgctgggcctggagagcctcaagctccgggtg
gatgtcaaagtggcgaatgtgatcttgagcttcatgtctcgaagagaagaaccggagcac
aactccatccgggagtccttggttgaaaaactggcagaactggcaaagggagaaaaaaca
gctgcagaagagctgcttgtctgcctggaggaagcagtttgggataagatcgagcatcag
aatataaagaagacctccagcagcgcgaggaagcagtgggcgttcgtggtccagttctgc
aggctccatagcctcaagctggacacctcctacctgaaagagtgtgcgcggtctgacgag
tggctgccgtttctcatcgaagcccaaatgtatgactacccacctgctgaggtcctggcc
atccttccagacttcacccttcctctgcaggaccatctgaggctggccttcgagagcctg
ccagcccctctccctcaggtgggaggccaggttagccctccccgcctgccgaggcaggag
cagcagccaggccgttcctggggcgatctcttccacgttctgcttcagtgtcagcaccag
ccctgcccttggcgctacctcctgggggagagcctgcagcactgtgctcccgtcctgtgt
gtgctggccgcctgcttccagcaggaggccaacattcttcactgcctctgcgtttggata
ataacttctctggacagctccactgtgggcgaagtggtggacaatacggaaggctcagtg
gaaacccacgagtgggatcttcaggacttggccacactgtggcaggtccttttgaggagg
cagaaagttagaaccctgctgacgggctttcgtctctttctgaaggactctcctttgctg
accacccttgaggtttatgaattgtgcctggactacaaaaattaccccaaagctcagacg
aaactccttgagctccaagccagtctttcaaaacttgaagccacagatgaagagctgcct
cctgttctgcccgcttggtggctgaaggaacaggtttcctttcttctggagctaatgctg
cagcagtgcagaacgcagtacgagttgcgaaggctccttcagatctttgcagataccgac
accgttcttcctcgtgggccagacatgaagaagctgagcggcctctgctggatcttgaag
gactcgtcgatctcaatcagccgtgcccttctaagcagttacactcctgagaatttctcg
aacgaatgcgcaagaattctggagcagcttcaggagaggagctggttctccgtggcgcag
gcggtggccgaaatggctgggctgcccgtggaccacattgttgtccaagagatgctgcag
aagctcaatctcttgaaggaggctggccactggcctcagaagcaggcgagggctgagttc
tggaagagctgccacgagaacttcgcgagaagcgcggtttccaaccgaacagccttcagt
ttcttctctgctcaggcagatgctgtatctgagccctcggacaccgagaggatgtctgcc
gtgcaggagcggcggcttctgctcaccttggccggccactggctggccagcagcgaccca
gttccactgaatgaactggaggcgctcgagagaaaaatctggctttgtcacatagcgcag
cattccttgaaccaggcttctgggccggccaggcacccgttctctccggagattcccatg
accggcggactgtccttcgatgccctggccgagcagttctccttctccaagctgcctgcc
ctcagctctcccaagtacctgcagctggagggcctgccttcccaaggtgcatcgcaggcc
gccctcccggccgctgacatggaactgctgagtttcctgattgggcgccttttagacaag
gggcgggtgcacgaagccagccgcgtgtgccagtacttcagctgctacagccgagacgtg
ttgctggccctgcactgcagagccctggctgccggggaagctgttctcagctgctcccac
cctgagcttcaagctgttcttgctgcaagagaaaaatcccagcaggaggtggtggaggag
gaggaggaggaagctgaggatggggaccttcaggacgggcatctacgacgcacctcaagc
cgggagtcctggtcctttatgggagctccgtgttcagacgataaggtcgtggacagtctg
caggccctgactgccgcgtgcgtgcacgggcgcaactactgccggcaggtcatctgcctc
tatgaactgtccaaggagctcggctgctcgttcagcgacatctctgcccgggactctcga
aagctgctccgcgccctcttgtcatctcagcagccagacaggtgccgaagggcacaggcc
ttcatcaccacccaggggctggagccggagctggtggccgagctggtggccgaggaggtc
gtgcgggagctgctggtctggtcgcaaggagaaggagggcataaccaaatgctgaatccg
gcagaggagagccaggtgttcttgcagctggccaaactgtgccaggaccacactctggtg
ggcacgaagctactggatagaatttcttccatgccacacggggaacttgcctgcaccaca
gagctgctgattgtggcccaccagtgcttcagcctgacctgccatatggaagggatcact
cgtgtccttcaagctgcccggctgctcaccgatgaacatttggctcccaatgaaaagtac
ggtctgatggttcgtcttctcaccggaattggcagatacaatgagatgacgtacatcttc
gacctcctgcacgagaagcattatttcgaagtgctgatgaggaagaaattggacccgagc
ggcactctcaagacggccctgctggactacatcaagcgctgccgccccggagacagcgag
aagcacaacatgatcgccctctgcttcagcatgtgccgggagattggcgagaaccacgag
gcggcggctaacgtccagctgaagctcatcgagtctcagccctgggaggagagcctccgg
gacatgccgagcctgaagaagcacctgatgaaagccctgaccctcttcttggatgccgct
gaaagctattccaaggacttctgtgtgcaccactcgctgcgctgcaacaggttgaccaag
ctcatcactctgcagctccacctcctgaacacaggccgcagcaccaagctgatcagcctc
caccagcaggacctgttggactgcgtcgtgaacctgcccagattctaccaggctgccatt
gtggctgacgcctacgacttcgtccctgactggtcggaggtcctgtatcagcacgtgatg
gtcaagggggacttcagttatctggaggaatataagcaacgaggcctgctcaaggcgagc
acctttgaggacgttgctcagaggctgaagcagaacccaggcagcgcggctcctctgaag
aacctgaagaggctcctgacttactgcgaggacatctacgtgcagtacaagctggcctat
gaccaccagctctttgacgtggtgaccatgctcctgcaggacccccagacaggggcttgc
ctgaatgacctcctggcaaactag
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integrated database retrieval system
