Sphaerodactylus townsendi (Townsend's least gecko): 125425990
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Entry
125425990 CDS
T08213
Symbol
SF3B1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125425990 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stow03041
]
125425990 (SF3B1)
03036 Chromosome and associated proteins [BR:
stow03036
]
125425990 (SF3B1)
Spliceosome [BR:
stow03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125425990 (SF3B1)
Complex B
125425990 (SF3B1)
Complex C
U2 SnRNP specific factors
125425990 (SF3B1)
Chromosome and associated proteins [BR:
stow03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125425990 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
125425990
NCBI-ProteinID:
XP_048339920
LinkDB
All DBs
Position
LG02:complement(386985..433127)
Genome browser
AA seq
1307 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKVALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGE
SETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETSRHXCCSAEMHSIGETPTPKASKENALGXGLPASQMGWSDTLPMLTLLR
NPIVTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPP
PAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVSDQPSGNLPFLKPDDIQYFDK
LLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILP
LLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREII
SNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKS
WQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAAT
PYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREF
QSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTT
VELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGIL
YAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISR
TAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLL
PRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRAT
VNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR
VPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSL
GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHP
ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaaggc
aagaaagttgcccttgatgaagctcagggcgtcggtcttgactccacggggtactatgat
caagagatctatggtggcagcgatagccggtttgctggatatgtgacttcaattgccgca
actgaattagaggatgatgatgatgactactcttcgacaagcttgcttggccagaagaag
cctgggtaccatgccccagtggcattgcttaatgatataccacagtcaacggaacagtat
gatccatttgctgagcatcgtccacagaagattgctgatcgggaagatgagtacaaaaat
cgcaggcggatgatgataatttcccctgagcgtcttgatccttttgcagacggagggaag
acacctgaccctaaaatgaatgccagaacatatatggatgtaatgcgtgagcagcattta
acaaaagaagagagggagattaggcagcagctagcagaaaaggctaaggcgggtgaactt
aaagtcgtcaatggtgccgcatcccagcctccatccaaacgcaagcggcgttgggatcag
actgccgaccagactcctgggaccacaccgaagaaactctcgagctgggatcaagctgag
actccgggacacaccccgtcactgcgatgggacgaaacgcctggccgtgccaagggcgaa
agcgagactcctggggcaacccctggttctaagatatgggatccgactccgagtcatact
ccagcaggagctgcgacccctgggcgggacacccctggccatgcgaccccaggccatggt
ggtgccacctctagtgcacggaagaatcgttgggatgaaactcccaaaacagagagagat
actcctggccatgggagcggatgggccgaaacatctcgtcactgatgctgcagtgcagaa
atgcattccatcggtgaaacaccgacccctaaggccagtaaagaaaatgcgttaggatga
ggcttacctgcaagccagatgggctggagtgacactctaccaatgttaaccctgcttagg
aaccccattgttacaccagctatgaacatggccactcctaccccaggtcacataatgagc
atgactcctgagcagctccaggcgtggcgatgggagagagaaatagatgagagaaatagg
cccctgtctgatgaagagctggatgccatgtttcctgaaggatatcgggttctccctcct
ccagctggttatgttcctattcggactccggctcgtaaacttacagccacacccacgccc
ctggggggcatgactggcttccatatgcagactgaagacaggaccatgaagagtgtcagc
gaccagccctctggaaatctgcctttcctcaagccagatgacatacaatactttgacaaa
ctgctggttgatgttgacgaatcaaccctgagtccagaggaacagaaagagagaaaaatc
atgaaactgcttttgaagattaaaaatggcaccccgcctatgaggaaggctgctttgcga
cagattacagataaagctcgtgaatttggagcaggacccctcttcaatcagattttacct
ctgctgatgtccccaacgcttgaagatcaagagcgccatttgcttgttaaagttattgat
cggatcttgtacaaattggatgacttggtccgaccgtacgtgcataagattcttgtggtc
attgaacccctgctgattgatgaagactactatgccagggtggaaggcagagaaatcatc
tccaatttggctaaggcggctggtctggcaaccatgatctccactatgagacctgatatc
gacaacatggatgagtacgtgcgtaacaccacggctcgagcctttgccgtcgtggcctct
gctctgggcattccttctctgctccctttcttaaaagcggtgtgtaagagcaagaagtcc
tggcaagccaggcacacgggcatcaagatcgtccagcagattgccattctgatgggctgt
gccattttgcctcatctcagaagcctggtggaaatcattgagcacggcttggtggacgag
cagcagaaagtgcgcaccatcagtgctttggccatagctgctttagctgaggccgccacc
ccatatggcatagaatcgtttgactctgttctgaagcccctgtggaagggcatccgtcaa
cacaggggaaagggtctggctgcatttttgaaagccattggttacctgattccgctgatg
gatgccgagtatgccaattactacaccagagaagtcatgttgatccttatcagagagttc
cagtctcctgacgaagaaatgaaaaagattgtgttgaaggtggtcaagcagtgttgtggc
acagatggggttgaagcaaactacattaaaactgagattctccctccgtttttcaagcac
ttttggcagcacaggatggccctggacagaagaaattaccgacagctggttgacacaacc
gtggagttggccaacaaagttggtgctgctgaaattatttccaggattgtggatgatctg
aaagacgaagctgagcagtaccgaaaaatggtgatggagaccattgagaagattatgggg
aacctgggagctgctgacatcgaccataagctggaagagcaactgattgatggcattctg
tatgccttccaggagcagaccacagaggactctgtgatgttgaatggctttggcacagtg
gttaacgctctcggcaagcgagtcaagccgtacctgccccagatctgtggtacagttttg
tggcgtctaaacaacaaatcggccaaagtaagacagcaggctgccgacctgatatctcgt
actgcagtcgtaatgaagacgtgtcaagaggaaaaattgatggggcacttgggtgtggtg
ttgtatgaatacctgggtgaagaataccctgaagttttgggcagtatcctaggagcactt
aaagccattgtgaatgtcattggaatgcacaagatgacgcctccaatcaaagacttgctg
ccaaggctcacacctatcttgaagaacagacacgagaaagtgcaggagaattgtatcgac
ctggttggccgtattgcagacaggggggcagaatatgtctctgccagggagtggatgagg
atttgctttgagttgcttgagttgttaaaagcacacaagaaagctatccggagggcaacc
gtcaatacatttggctatattgcaaaagctattgggccccacgatgtgctggcaacactg
ctgaataatttgaaagtacaagaaaggcagaatcgagtgtgtacgacagtcgccattgct
atcgtagctgagacctgctcccccttcacagtcctgcctgccctgatgaacgaatatcga
gtcccagagctgaatgttcagaacggtgttctaaaatctctctccttcctctttgaatat
attggggaaatggggaaagactacatctacgctgtaaccccattgctggaagatgcttta
atggacagggaccttgttcacaggcagacggccagcgcggtggtacagcacatgtctctt
ggagtgtacggcttcggctgtgaagactcgctgaatcacctgttaaattatgtgtggccc
aatgtgtttgagacgtcgcctcatgtcattcaagcagtcatgggggctttggagggcctg
agggttgccattgggccttgccgaatgttgcagtattgtttacagggcttgtttcaccct
gccagaaaagtcagagatgtgtattggaagatctataactccatctatattggctcacag
gacgctctgatagcacattatccacgaatctacaatgacgagaagaacacctacattcgt
tacgaacttgactatgtcttgtaa
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integrated database retrieval system
