Sphaerodactylus townsendi (Townsend's least gecko): 125426105
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Entry
125426105 CDS
T08213
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stow03400
]
125426105 (PMS1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125426105 (PMS1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HATPase_c
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
125426105
NCBI-ProteinID:
XP_048340207
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Position
LG02:complement(9442102..9513398)
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AA seq
817 aa
AA seq
DB search
MCSQALEMKQLPAETVRILSSSQVITSVNSVVKELVENSLDANATSIDVKLENYGFDKIE
VRDNGDGIKAADVPVMAVKHYTSKISSSEDLERLTTYGFRGEALGSICGTSQVLVITKTA
ADDFSTQYILDGSGHVTSQKPSHLGQGTTVTVLKLFQNLPVRKQFYSTDKKRKEEIRKIQ
NLLMAYGIVKPELRLTLTHNKTVIWQKNRVSDHKMAFMAVVGTAVMTSMVPFQHQCEDPG
VSLSGFLPKPSSDASLTSHSSSERSFIFINNRPVYQKDILKLVRRYCNLKSSNHSYPIFC
MSITTSSSAVDVNLTPDKSQVLLHDKESVYLLIEDILMSLYGPRTRAAGGETDVTDAASV
DIFPNETGQTDVPVNEIESCGNPALPARTSLFSFNNDVRNGETGKNTEVCLKNQTSYNDS
PPNLLTEKELPGSETVGFDRVQEHSLNNLPDEGQRSRYQAVNTNGAILKDALSENGIGDD
LRSDKIQEAEKMETPKIPEDSSEISADKWSTGHAFTNSRGENLEPVRLLIPETEEAGMRK
ENNGRSLPNFQAEKNDPSSKKTNVVNEKAGQITAYDLIKSQIVRKPVTAFGLFTQDSRSK
LSTDKLKASAEELRLEMEEMWEALNEKEKKKYEERADKDLERYHAQSRRALDLNVQRSAK
GRERKPKSRLKDCLSSQQKLDRLFHSQTGKKPNGSHAIKTVQVPFAMEVLKERLCRLMQK
ESDEGKLCLIHLSNFPNGWIMASDQKIMMLHPYRVEEALLFKKLLRDHKLPTQKLDRPIA
LTDSLLSDPGYLAALRNMPKESGRFDRTSYLTRLGIA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagtcaggcccttgaaatgaagcagctgccagcagaaacggtccgaattctttcc
agctcacaggtgattacttcggtcaacagcgtggttaaagagctggtggaaaactccttg
gatgccaacgcaactagtattgatgtcaagctggaaaattacggctttgataagatcgag
gttcgagacaacggcgatggaatcaaagcagctgacgttccagtcatggccgtgaaacac
tacacttcaaaaataagttcctccgaggatctcgaacgcttgacaacgtacggttttcgt
ggcgaagccttaggttcaatttgtggcacgtctcaagttctggttataacaaagacagct
gctgatgactttagcacccaatacattttggatgggagtggtcacgtgacttctcaaaag
ccttctcatcttggacaaggcacaactgtgacagttctgaaactgttccagaacctccct
gtaaggaagcagttttattcgacagataaaaaacgcaaggaagaaattagaaaaattcaa
aatcttctgatggcgtacggcatcgtgaaaccagaactgagattaacgttgacgcataat
aagacagtcatctggcagaagaacagggtatctgatcacaaaatggctttcatggcagta
gtaggaacagctgttatgaccagcatggtgcctttccagcatcaatgtgaagaccctggg
gtatctctcagtggcttcctgccaaagcccagctcagacgcgtctttgacaagccattca
agttcagaaaggagcttcatctttataaacaacagaccagtttatcagaaggacattctt
aagctggttcggcgttactgtaacctgaagtcttctaaccattcataccccattttctgt
atgagtattaccacttcttcgtctgcggtggatgtcaatttaacaccagataaatctcaa
gtattgctgcacgataaggagtccgtttatcttcttatcgaggatatcttaatgtcgctg
tacgggcctcgaacccgggctgccggtggtgaaactgatgtaacagatgcagcctcagta
gacatctttcctaatgaaacaggacaaacggatgtgcctgttaatgagattgaatcctgc
ggaaacccagctctgccggcacgtacctcgttgttttcgtttaataatgatgtgcgaaat
ggggaaacaggaaaaaacacagaggtctgtttgaagaatcaaacgtcgtataatgattct
cctcctaacctccttaccgaaaaagaactacctggcagtgagacagttggcttcgataga
gttcaggagcattccctaaacaatttaccagatgagggccaacggagcaggtatcaagca
gtgaacacaaatggcgctatcttaaaggatgctctttctgaaaatggcattggggatgat
ttgagaagcgacaagatccaagaagcagaaaagatggaaacaccaaagatcccagaggat
tcctctgaaatctctgctgataaatggagcacagggcatgcgttcacgaattccagagga
gagaatctggaacctgttaggctattaattcccgaaacagaagaagcaggaatgcgaaag
gaaaataatggtcgtagtctaccaaattttcaagcagaaaagaatgatccaagtagtaaa
aaaacaaatgtggtcaatgagaaagcgggacagataacagcctatgatctaattaaaagt
cagatagtaaggaaacctgtgactgcatttggtctttttactcaagacagtcgttccaaa
ttgtcgactgataagctcaaagcaagtgcagaagaactgaggctcgaaatggaagaaatg
tgggaagcactaaacgaaaaagaaaaaaagaaatacgaggaaagagctgataaagacctg
gagcgataccacgcgcaaagccgaagagctctagatctgaatgtccagagatcagcgaaa
gggagggagagaaaacccaagtccaggctgaaagactgtctgtccagtcagcagaaactc
gaccggcttttccattctcaaacgggaaagaaacccaacggttctcacgctataaaaacc
gtgcaagtgcccttcgcgatggaggtgctcaaagagaggctttgccggctgatgcagaag
gagtcggatgaaggaaaactctgtctgattcatctttcgaatttccccaacgggtggatc
atggcgtccgatcaaaagataatgatgttgcatccataccgagtggaagaagccctgctc
tttaaaaagctcctccgagaccataagcttcctacacagaaactggacagacctattgcg
ctaactgacagtcttcttagtgatcctggctacctggcagctcttcgtaatatgccgaag
gaaagtggacggttcgacaggacatcctatttaactagactaggaattgcatga
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