Sphaerodactylus townsendi (Townsend's least gecko): 125426548
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Entry
125426548 CDS
T08213
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04140
Autophagy - animal
stow04142
Lysosome biogenesis
stow04148
Efferocytosis
stow05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
125426548 (VPS39)
04140 Autophagy - animal
125426548 (VPS39)
04148 Efferocytosis
125426548 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125426548 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stow04131
]
125426548 (VPS39)
Membrane trafficking [BR:
stow04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125426548 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
SAM_CEP-1_C
LIF1_N
Motif
Other DBs
NCBI-GeneID:
125426548
NCBI-ProteinID:
XP_048340898
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All DBs
Position
LG02:123381828..123415934
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AA seq
884 aa
AA seq
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MHDAFEPVQILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYTIRKEMGEVTTSESGCCNRF
EVKLEKSHKNFSKKIQQIHVVPQFKILVSLLENSIYVHDLLTFQQITMVSKAKGATLFTC
DLQHSDTGEEVLRMCVAVKKKLQLYYWKDREFHELQGDLSVPDVPKSMAWCKNSICVGFK
RDYYIIRVDGKGSIKELFPTGKQLEPLVAPLAGGKVAVGQDDLTVVLNEEGMCTQKCALN
WTDIPIAMEHQPPYIVAVLPRYVEIRTYEPRLLVQSIELQRPRFITSGGTNIVYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLADMKDDSDNEKQQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPELLPSDYKKQLQYPNPVPVLSPAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMDGIPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESELVLKKAHKYSELIILYEKKGLHDKALQVLVDQSKKANSPLKGHERTVQY
LQHLGAENLNLIFAYSVWVLRDFPEDGLKIFTEDLPEVEALPREKVLNFLRENFKSLAIP
YLEHIIDTWEEAGSEFHNCLIQLYCEKVQDLMKEYLTSFPPDKTPVPPGEEEGELGKYRH
KLLHFLETSSCYDAEQLISDFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTNMAENY
CHKHYDRAKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFSQVLKNLLHAEFLRIQEERIVHQQV
KCIITEEKVCSVCKKKIGNSAFAHYPNGVVVHYFCSKEVGTADT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgcagatcctggagaagctgccgctgcagatcgactgt
ctggcagcgtgggaggaatggcttttagttgggacaaaacaaggacaccttctcctttac
acaattcgaaaagaaatgggagaggttacgacatcagaaagtggctgttgcaacaggttt
gaagtgaagctagagaaatcgcacaagaacttctcgaagaagattcagcagattcatgtt
gtgccccagttcaaaattttggtcagtttgttagaaaacagcatttatgttcatgatctg
ttgacatttcaacagatcacgatggtttccaaggctaagggagcaactctcttcacctgt
gatctgcagcactctgatacgggagaagaagtcctaaggatgtgtgtagcagtgaaaaag
aaactacagctctattactggaaagacagagagttccatgaactgcagggtgacttaagt
gtgccagatgtacccaagtcaatggcatggtgtaaaaattccatctgtgtgggtttcaag
agggactactatataataagggtggatggaaagggttccatcaaagaactcttccccaca
ggaaagcagcttgagccactggtagcccctttggcaggtggcaaagttgctgtcggccaa
gatgatttaactgttgtactgaatgaagaagggatgtgtacacagaaatgtgccttgaat
tggactgatatcccaatagccatggagcatcaacctccatatattgtggcggtacttcca
aggtatgtcgagatccgtacttatgagccccgtctcctagtacagagtattgagctgcag
aggccacggttcattacctcaggaggtacaaatattgtgtatgtggccagcaatcatttt
gtttggcgacttattccagtttccattgcaactcagattcagcagcttctccaagataag
caatttgaattggctctgcagttggctgatatgaaggatgactctgataatgagaagcaa
caacagatccatcatattaagaatctttatgccttcaatctcttttgccaaaaacgcttt
gatgaatctatgcaggtttttgctaagcttgggacagatcctacacatgtgatgggtctt
tatcctgaactgttgccaagtgattataagaaacagctccaatatcccaatcctgtgccc
gttctctctccggcagaactggagaaagcacatttggcacttatagattacttaactcag
aaaagaagtcagttggtgaagaaactgaatgactcggaccatcagtccagcacttcaccc
ctcatggatggcatccccaccatcaaatcgaagaagaagctgctgcagatcattgacaca
accctgttgaaatgttatctccataccaatgtagccctggtggcaccactgttgcgcctg
gaaaacaatcactgccatattgaggaaagtgagcttgtactcaagaaagcccacaaatac
agtgagctgatcatactgtatgagaagaaaggtctgcatgacaaagctttgcaggttcta
gtggatcagtcaaagaaagctaactcacctttgaagggccatgagaggacagtgcaatac
ttgcaacatttgggagcagagaatttgaacttaatatttgcctattctgtttgggtgctt
agagacttccctgaagatggactgaaaatatttacagaagatcttcctgaggtggaagcc
ctcccacgtgaaaaggttcttaacttcctgcgagagaactttaaaagcctggctattcct
tatttggaacatataattgatacctgggaagaggctggttcagaattccacaactgccta
attcagctttactgtgagaaagtgcaagacttaatgaaagagtatctcacatcttttcct
ccagataaaacaccagtgccacctggagaggaggaaggagaactaggaaagtatcggcac
aagcttcttcattttcttgagacttcgagttgttatgatgctgagcagctcatcagtgac
tttccctttgatggccttctagaagaacgtgcactgttgctgggaaggatgggaaatcat
gaacaggcactcttcatatatgtgcacatcctaaaggacaccaacatggctgaaaattac
tgtcacaaacactatgatagagccaaagatggcaacaaagatgtgtacttgtctctgctc
cgtatgtacctttcaccgcctagtgtgcactgcttaggaccaatcaaaatggaacttttg
gagcctcaagctaatcttcaggctgcattgcaggttttggagcttcatcacagcaagttg
gacactaccaaagcaataaacctccttccagctaacactcaaattagtgagattcgaatc
ttcctggaaaaggtccttgaagaaaatgcacagaagaagcgattcagtcaagttcttaag
aaccttctccatgctgaattcttgagaatacaggaggaacggattgtacatcagcaagta
aaatgtataatcacagaggaaaaggtttgcagtgtatgtaaaaaaaagattggaaatagt
gcctttgcccactatccaaatggagtagttgtgcattatttctgttccaaagaagtgggt
acagcagatacctga
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