Sphaerodactylus townsendi (Townsend's least gecko): 125426580
Help
Entry
125426580 CDS
T08213
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125426580 (COL18A1)
00535 Proteoglycans [BR:
stow00535
]
125426580 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125426580 (COL18A1)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125426580 (COL18A1)
Proteoglycans [BR:
stow00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125426580 (COL18A1)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125426580 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125426580
NCBI-ProteinID:
XP_048340980
LinkDB
All DBs
Position
LG02:71892381..72111982
Genome browser
AA seq
1872 aa
AA seq
DB search
MARVVQNFGLLLLLTCSLSNAQGWRSWLWGSSEKTTLSPTKAVDTEDQMTHQLATSEATT
LIIPSESTTQQTGKVWNIFTLKRPDLTADTTAPTTATASPSELGGQEGNTAGVGTEVLNV
AEEIQNLVQQWNKKTTEETKRTEALVTTGFLDTSPLSTTELASVQNVTANLTREVQILLE
TEQSQISLSVITKPNLLWNKTQVLLKKPEMPLPGSATFSFSPDDQASRDVVPFQESTDAG
REGAITPELRADRGAFSENRGIVSSANIVELQKLQANSSVDVGITSKVVGASDNWLSLYV
ANSNQSAYDNNSTHHSLKKHPFKHSGISVADANKNYSSDSVSNSNATNLTDFPPASNSES
LEFLLTYTVQHFSNSSAGLPSFYSGLTPTAGHCLPLPAKLSYCNNLGMKHFRVPNYLHHG
SEDEIRAALHEWEGLLKSRCHRYLEWFFCLLLVPGCNTSLPVTPPPCRGFCEALKDLCWI
HLKEGHLPISCDTLPAEDGVYSCVFVNVSAENVSPEVGLLELIGEPPPDQITKIYGPDNS
PGYVFGLDANTGQVARYHLPSPFYRDFSLLFHIQPTSDKAGVLFAITDASQSIIYVGVKL
SEVKDGKQQIIFYYTEPGSQNSYAAATFTVPSLVNQWTRFAISVEEEEVVLYMDCEESER
VRFERSPDEMELEEGSGLFVAQAGGADPDKYQGIIAELKVKGDPRAADVQCEEDEDDSDT
ISGDGGSGAEEKPQSPGKEKGAHVPLNLPEPPPVTSPPTNKKPVQAEEKPSLQTELTKPE
ERPPFASGIVGAKGEKGDPGEKGDRGPKGDSGVGEVLPSGGAKGDKGEKGELGVKGNAGF
GYPGSKGQKGEPGVQGSPGPAGPPGPPGTVIQSLDGSVIEQVAGPPGPSGPPGLPGKDGL
PGKDGEPGDPGEDGKSGDVGPQGFPGTPGEPGQKGEKGDPGVGAQGSPGPPGPPGLPGFS
SKLDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGLPGQPGRFGTNGTDLPGPPG
LPGVPGRDGSPGLPGLPGPPGSPGRDGSPGQPGANGASGEPGELGLPGAPGPKGSKGDTG
LTGTPGETGLAGLPGPMGPRGQPGPPGPPGPGFAPGIDDMEGSGLPFVSAVPGARGPEGP
QGQTGLPGLKGDAGSSGVPGEKGDKGDTGLPGLDGRPGLEGFPGPQGAQGSRGDPGDKGE
PGQDGIGLPGLPGPPGPPGQVIHLSSDDTSLSSVLGPEGKQGHAGFPGPVGPKGDIGSSG
PQGSSGPKGEKGEPGVIIGPDGTVIAAQAKGEKGESGSRGPVGPAGPPGRQGQKGEIGFP
GRPGRPGMNGLKGEKGDPADSSGGLGLRGSPGLPGPPGPPGPPGNIVPVYDNNAFSETGP
PGPPGLPGYHGAPGQKGEKGEMGAPGLPSQFPFDLSRLGSTVRGEKGDRGDSGAKGEKGE
PGGGGFFGSSIAGPPGPPGYPGLPGPKGDSVRGPPGPPGPQGPPGAGFEGRTGPPGPPGP
PGPPSFPGPHRQPISIPGPPGPPGPPGPPGVGDASSGQLRILPSYQSMMSRAHEVTEGQL
LFIRDREELYIRVRNGFRRVLLEERVSISGPGLDNEVYDRPPNWPRGGGTASSGSQRPFP
QHLPLHPYREFSVYSTAKPWRGDESVANQHRLPELPVIHHPHQGAQQQQKQVNAFFHNSP
QSETLPSAIHTHHDFQPALHLIALNTPLSGSMRGIRGADFQCFQQAREVGLTGTFRAFLS
SRLQDLYSIVRRADRSTVPIVNLRDEMLFTNWEHLFSGSEAPFRTGVRILSFDGRDVLRD
SAWPQKSVWHGSDSKGRRLTESYCETWRTDDTVVTGQAASLTSGKLLEQKSSSCKNAFIV
LCIENSFMTSQK
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagttgtgcagaattttggactcctgctgttgctgacctgtagcttatcaaat
gcccagggctggaggagttggctttgggggagttcagagaaaacaaccctgtctcccaca
aaggctgtcgatactgaggatcagatgacacatcagctggccacatccgaggcaaccacc
ttgatcatcccctctgaaagcaccacacagcaaacgggaaaagtatggaatatattcacc
cttaagagaccagacctgactgcagacacaactgcccctactacagctactgcatcacct
tctgaactgggaggccaagagggaaatactgcaggggtagggactgaggtactcaatgtc
gctgaagaaatccagaatctggttcagcagtggaataaaaagacaactgaagagacaaag
aggaccgaggcactggtgacaactggttttttggatacttcccctcttagtactacagag
cttgcttctgtccagaatgttactgccaacttgactcgtgaggtgcagatcttgctggaa
actgagcagtctcagatttctctctcagtgattacaaaacccaacttactgtggaacaag
actcaagttctgttaaagaagcctgagatgccactcccaggtagtgctactttctcattt
tcacctgatgaccaagccagcagggatgtggtgccttttcaagaatccacagatgcaggg
cgagaaggtgctattactccagaactaagggcagatcggggagctttctcagaaaaccga
ggaattgtatccagcgcaaatattgtggaattgcagaagcttcaggctaatagcagcgtg
gatgttggaattacatccaaggtggtgggagcttcagacaactggctatccctttatgtt
gcaaattcaaaccaatcggcctatgataacaatagtacccatcacagccttaaaaaacac
ccctttaagcattctgggatatcagtagctgatgcaaataagaactactctagtgattct
gtttctaattcaaatgcaactaatttaacggatttcccccctgccagtaactctgaatct
cttgagtttctactaacctacactgtgcaacattttagcaatagtagtgcagggcttcct
tccttttattctggattgactccaacagctggccactgcttgcccttaccagccaagctg
tcatattgcaacaacctgggcatgaagcatttccgagtgccgaattatttgcatcatggc
agtgaggatgaaattcgggctgctttgcatgagtgggaggggcttcttaaatcgcggtgt
caccgctacttggagtggtttttctgcttgctgctggtacctgggtgtaacacttctctt
ccagtaacacctccaccgtgccggggattttgcgaggccctgaaagatctatgttggatt
catttgaaagaggggcatcttccgatatcatgtgacactctcccagcggaggatggtgta
tattcatgtgtttttgttaatgtttcagcagaaaatgtcagcccagaagttggtctctta
gagctgattggggaacccccgccagaccagataaccaaaatatatggccctgacaacagt
cctggctatgtgtttggactggatgccaacactggccaagtggcccgttaccacctcccc
agccctttttatagagacttctcattgctgttccacattcagcccacatcagacaaggca
ggagtgctttttgccatcacagatgcttcccagtcgattatctatgttggtgtgaaactt
tcagaggtgaaggatgggaagcagcagataatcttctactatacagaacctggctctcag
aactcctatgctgctgccacattcacggtcccttcccttgtcaatcagtggacacgcttt
gccatcagtgtcgaggaggaagaggtggttctctatatggactgtgaagaatctgaacga
gtccgctttgagcgctcgcctgatgagatggaactggaagaaggctctgggctttttgtg
gctcaagctggaggggctgacccagacaaataccagggtataatcgcagaactgaaagtg
aaaggagatcctcgggcagctgacgtccagtgtgaggaggatgaggatgattctgatacg
atatctggagatggtggtagtggtgctgaagaaaagccacagtccccaggaaaggaaaag
ggagctcatgtgccattaaacctcccagaacccccacctgtcacttctcctcccactaat
aaaaagcctgtacaggcagaagagaaacccagtttgcaaactgaactaaccaaaccagaa
gagaggccaccatttgcttcaggaatagttggagccaaaggtgaaaaaggggatccggga
gaaaaaggtgaccgtggccctaaaggggattctggagttggtgaagttctaccatcaggt
ggtgctaaaggtgataagggagaaaaaggggagctgggtgttaagggaaatgcaggcttt
gggtatcctggctctaaaggacagaaaggcgaaccaggtgtgcaaggatctccaggccct
gctggcccccctggccctcctgggactgttattcaaagccttgatggctctgttatagag
caggttgctgggcctccaggaccctcaggaccccctggattgcctggaaaagatggttta
cctggaaaggatggagagcctggggatcctggtgaagatggtaaatcaggtgatgttggc
cctcaaggatttccggggaccccaggagagcctggacaaaaaggagaaaagggtgatcca
ggagttggtgcacaaggttctcctggtccaccaggaccacctgggctaccaggattcagc
tctaaactggacaagttgacatttattgatatggaaggctctggctttggaggtgacttg
gaaagtttccggggtcccagaggacctcctgggcccccagggcctcctggagtaccaggc
ttgccaggacaacctgggagatttgggacgaatggtactgaccttccaggaccacctggc
ctccctggagtgccaggcagagatggcagcccaggacttccaggacttcctggtcctcct
ggttctccaggaagagatggcagccctggtcaacctggggcaaatggagcaagtggagag
ccaggagaactaggtcttccaggagcacctggtcccaagggcagtaaaggagatacaggg
ttaacaggaacaccaggggaaactggcttggcaggacttccagggcccatgggtcctcga
ggacagcctggacctcctggtccacctgggccaggatttgcacctggaattgatgatatg
gaagggtcaggactgccatttgtttctgctgtccctggagcacgtggaccagaagggcct
cagggacaaacaggacttccagggctcaagggggatgctggcagctctggtgtgccagga
gaaaaaggagacaagggagacacaggattgccaggactagatggtcgtcccggactagag
ggtttcccagggccgcagggggcacaaggtagcagaggggatccaggagataaaggtgaa
ccaggtcaagatggaataggattgccaggtctccctgggccccctggccctccaggacaa
gttatccatctgtccagtgatgatacaagcttatctagtgttctgggtccagaaggcaaa
caaggacatgctggtttcccagggccagttggaccaaagggtgacataggatcctcaggt
cctcagggttcttcaggaccaaagggtgaaaaaggagagccaggcgttataattggccct
gatggaactgtcatagcagctcaggcaaagggcgaaaagggtgagtcaggctcaagagga
cctgtgggaccagcagggccacctgggcgtcaaggacagaaaggagaaattggctttcct
ggaagacctggtcggccaggcatgaatgggttgaagggagaaaaaggtgaccctgcagac
tcaagtggaggcctgggcttaaggggttctcctggtctccctggaccacctggaccccca
ggacctccaggcaacatagtgcctgtttatgacaataatgcatttagtgagacgggccct
cctggacctccagggctgcctggctaccatggtgctcctggtcagaaaggagagaaaggc
gagatgggtgctccgggactcccaagccagttcccctttgatctcagtagattgggctcc
acagttaggggagaaaagggggacagaggagactctggagcaaaaggtgaaaagggtgaa
ccaggtggtggaggattctttggatcaagcatcgcaggacctccaggtcctccaggatat
cctggtcttccgggtccaaaaggggacagtgttaggggaccacctggtccccctggacct
caaggacctcctggggcaggatttgagggtcggacaggtcctcctggtcctcccggtcct
cctggtcctccttcttttccaggtccccacagacaacctatcagtattcctggacctcca
gggccaccagggccaccaggacctccaggcgttggcgatgcatcttctgggcagctgcga
atcttaccaagctatcagagcatgatgagcagagctcacgaagtgactgaagggcagctc
ctcttcatccgagatagagaagagctctacatccgtgtccgcaatggtttcagaagagtc
cttcttgaggaaagagtctctatctctggtcctggtctggacaatgaggtatatgacagg
cctcccaattggccacgtggtgggggcacagcatcatctggatcccaacgaccattccca
cagcatttacccttgcatccataccgagaatttagtgtttactccactgccaagccttgg
agaggagatgagagtgtggccaaccaacatcgtcttcctgagctgcctgtcatccaccat
cctcatcagggagcacagcagcagcaaaagcaagtgaatgccttcttccacaacagcccc
cagtcagaaactcttccttctgccattcacacacaccatgacttccagcctgctctccac
cttatagccctgaacactcctctgagtggcagtatgcgtggcatccgaggggctgacttc
cagtgtttccagcaggccagggaggttggtctgacaggcaccttccgagcattcctctcg
tcccgcctgcaagatctctacagcatagtgcgcagagcagacaggagcacggtgccaata
gtaaatctcagggatgaaatgctatttactaactgggagcacctcttctcaggctctgag
gctcccttcagaactggggttcgtatcctctccttcgatggaagggatgtcttgagagat
tctgcttggcctcagaagtccgtgtggcatggctctgactccaagggacggagattaaca
gagagctactgtgaaacatggcggacagatgacacagtagtgacagggcaggcggcctca
ctgacgtcgggcaagctgctcgagcagaagagcagcagctgcaaaaatgccttcattgtc
ttatgcatcgaaaacagcttcatgacttctcagaaatga
DBGET
integrated database retrieval system
