Sphaerodactylus townsendi (Townsend's least gecko): 125426697
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Entry
125426697 CDS
T08213
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04622
RIG-I-like receptor signaling pathway
stow05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125426697 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125426697 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
stow04054
]
125426697 (IFIH1)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125426697 (IFIH1)
Pattern recognition receptors [BR:
stow04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125426697 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
CARD_2
Helicase_C
DEAD
ResIII
SWI2_SNF2
Yippee-Mis18
Cas3-like_C_2
Hph
C1_4
Motif
Other DBs
NCBI-GeneID:
125426697
NCBI-ProteinID:
XP_048341289
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All DBs
Position
LG02:35514694..35546467
Genome browser
AA seq
988 aa
AA seq
DB search
MEAAAPSRDECILYLVWCFRTKISRGLQVTRVLDLMPSLSAEGKEGVRAVLRNDGEIAAA
EVLLRALEDEAPRRQGLCQEFCDAVRGGGFQAAAYLEPSLNELPSPSLEADLEAGAFLLE
ALMGSLVEKLRAVQVADHFTNNFFQPEDVERVRAQDNFQGNHAAVRELLSRVVRKKDWLS
PFLEALRSSGHEGVADELTGPKNGLPHSETAEELKEGSDQEHRSSREENTLEESLGEASN
FSETDVSLLDLSVSDATESLGQVGLVNGDSDDVDDGDERASPEPELTLRDYQMEVAKPAL
EGKNIIICLPTGSGKTRVAVYIARDHLDKKREEQKPGKVIVLVNKIPLVEQHFRKEFHPY
LKHQYEVTRLSGDSQLKISFPEVVRKHDVIICTAQILENALLKADGDAEEGVSLADFSLI
VIDECHHTHKEGVYNNIMCRYVKEKRGNKKRMKENKPWSPLPQILGLTASPGVGGAKNHS
KAEEHILKICANLDAERIMTVKEHVSQLEDHVKAPYKKFEIADDKRKDPFREKLMSIMMK
IHAYCRFNPNCEFGSQTYEQWVIQEEKKASKEKNRKERVCADHLKKYNDALQINDTIRMI
DAYNHLKSFYQEEKIKKGKVNEEEDEPLKLDETDEFLFDLFYGNKKELKVLASKEQYENE
KLTMLRKTLMGEFTKTAEPRGIIFTKTRQSAYALHQWIKENSKFEEVGVKAHYLIGAGHN
SEYKPMTQNEQKEVIEKFRSGKVNLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMMQAR
GRARADESTYVLVASGDSGAVERENVNIYREKMMYKAIRQVQEMPREEYCNKIEGFQIQR
KVEAKMKAKKEQRKMLKQSPSLIKFQCKNCHKIICSGEDIQVIEKMHHVIAKQEFQELYI
VRENRTLQAKEVDYQTNGEIICKDCAQVWGTMMVHRGLDLPCLRIKNFVVVFQGKKTVQN
QTFKRWAELPVKFPDFNYAEHCVSSDED
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggcggccccttcccgcgacgagtgcatcctctacctggtctggtgcttcagg
acgaagatcagccgggggctgcaggtgacgcgcgtgctggacctcatgccctccctgagc
gccgagggcaaggagggtgtccgggcggtcctccgcaacgacggcgagatcgccgccgca
gaggtcctgctgcgcgccctggaggacgaggcaccccgccggcagggcctgtgccaggag
ttctgcgacgccgtgcggggagggggcttccaggccgccgcctacctggagcccagcctg
aacgagctgccctcgccctccctggaggccgacctcgaggcaggcgccttcctgctggag
gccttgatgggcagcttggtggagaaactcagggccgtgcaggttgcagaccactttaca
aataacttcttccaacccgaggacgtggagagggtgagagctcaagataattttcaagga
aatcatgcggctgtaagggaattgctgagcagggtcgtgcggaagaaggattggttgtct
ccgtttctggaggccttgcgtagttctggacatgaaggtgttgcagatgaactaactggg
cccaaaaatgggctgccccattctgaaactgcggaggagctgaaggaaggaagtgatcag
gagcataggtcatctcgtgaggagaataccttggaagaatcactcggcgaggcctccaat
ttctcagagactgatgtcagcttgctagacctaagtgtcagtgatgccactgaaagcctc
ggacaggtcggcctcgtcaacggtgattcagatgatgtggatgatggggacgagagagcg
tcacctgaaccagagctgactctcagagactaccaaatggaagtagccaaaccagcactg
gaagggaagaatattatcatatgcctccctacaggcagcggcaagacccgcgtagctgtt
tacattgccagagaccatttggataagaagagagaagaacaaaagcctgggaaagttata
gtacttgtcaacaagattcctctggtggagcagcatttcaggaaagagtttcacccttac
ctgaaacaccaatatgaagtaactaggctgagtggtgactctcagctgaaaatttcgttc
cctgaagtcgtccgaaagcacgatgtcattatctgcactgctcagatccttgagaatgca
ctgctgaaggcagatggagatgctgaagaaggggtcagtttagcagatttctctctgatt
gttattgatgaatgccatcacactcacaaagaaggagtctacaacaatatcatgtgtcgt
tatgtgaaagaaaaaaggggcaataagaagcgaatgaaagagaacaaaccatggagtcct
ctgccacagatcctaggactgacagcttcacctggtgtcggaggtgcaaaaaaccattcc
aaagctgaggaacatattctgaagatatgtgccaatcttgatgcagagaggatcatgact
gttaaagaacatgtgtcgcaactggaagatcacgtgaaggcaccctacaaaaagtttgag
attgcagatgacaaacggaaggatccattcagagaaaaactcatgagcataatgatgaag
atccatgcctattgtaggttcaatccaaactgcgaatttggatctcagacttatgaacag
tgggttattcaagaggagaagaaagcttctaaagaaaagaaccgcaaagaacgtgtctgc
gcagaccatttgaagaaatacaacgatgccttgcaaattaacgacaccatccgaatgatc
gatgcgtacaaccatctcaaaagcttctatcaggaagagaagatcaagaaggggaaagtg
aatgaagaagaagacgagccattgaaactagatgaaacagacgagtttctttttgattta
ttttacggcaacaaaaaggagttgaaagtgctagctagtaaggaacaatacgagaatgaa
aaactgacaatgctgcgcaaaactttgatgggggagttcacgaagacggctgagcccaga
gggatcattttcacaaagactcggcaaagcgcctacgccctccatcagtggattaaagag
aactcgaagtttgaagaagtcggagtgaaagctcattacttgatcggtgctggacacaac
agtgaatataagcccatgactcagaatgaacagaaggaagtcattgaaaaattccgcagt
ggaaaagtgaacttgctcattgctactactgtggcagaggaagggctggatatcaaggaa
tgtaacatcgttatacgctatggccttgttaccaatgaaatagctatgatgcaggcacgt
ggaagagctcgagctgatgaaagtacatatgtactcgtggcatcaggagattctggagcg
gttgagcgtgaaaatgtgaatatttatcgtgagaaaatgatgtataaggcgattaggcag
gtccaagagatgccccgagaagaatattgtaataagattgaaggctttcagatacaaagg
aaagtggaagccaaaatgaaggcaaagaaagagcagcgtaaaatgctcaagcaaagcccg
tccttgataaagttccagtgcaaaaactgccacaagataatatgttcaggagaagacata
caagttattgaaaagatgcatcacgtcattgccaaacaggaattccaggagctctatatt
gtaagagaaaacaggactctgcaagcaaaggaagttgattatcaaacaaatggagaaatt
atctgcaaagattgtgcacaggtttgggggactatgatggtgcaccgaggtcttgacctg
ccatgcttaagaataaaaaattttgtggttgtgttccaaggcaagaaaactgttcaaaac
cagaccttcaaaagatgggcagagttgcccgttaaatttccagatttcaattatgctgaa
cactgtgtatctagtgacgaagattaa
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