Sphaerodactylus townsendi (Townsend's least gecko): 125426789
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Entry
125426789 CDS
T08213
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03420
Nucleotide excision repair
stow04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125426789 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
125426789 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stow04121
]
125426789 (DDB1)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125426789 (DDB1)
Ubiquitin system [BR:
stow04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
125426789 (DDB1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125426789 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
125426789 (DDB1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
125426789
NCBI-ProteinID:
XP_048341471
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All DBs
Position
LG02:complement(72746334..72773694)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSCNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLERENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGGISLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAYKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSCQVVVAVGRVLYYLEIHPRELKQISCTEMEHEVAC
LDITPLGDTSGMSPLCAIGLWTDISAHILKLPSFDLLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDSSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPDE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQELGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTELATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcaattacgtcgtgacggcacagaagcccacggccgtcaacggttgcgtcacc
ggtcactttacctctgccgaggacctgaacttgctgattgccaagaacacccgcctggag
atctacgtggtcacggcagaagggttgcggcccgtgaaggaggtgggcatgtatggcaaa
atcgcagtcatggagcttttccgacccaagggagaaagcaaggatttgctcttcattcta
acagcaaagtataatgcttgcattctcgagtataaacaaagtggagagagcatcgatatc
attacccgtgcccatggcaatgtgcaggatcgtattggtcgcccctcagaaacaggtata
attggcatcattgaccctgaatgtaggatgattggattgcggctctatgatggcctcttc
aaggttattcctttggagcgggaaaataaggaattaaaggcatttaacatccgtctggaa
gagctgcaggtcatcgatgtcaagttcctgtatgggtgccaggccccaaccatctgcttt
gtttatcaggatcctcagggccggcatgtaaagacttacgaagtgtctttgcgtgagaag
gagtttaacaagggaccctggaaacaagagaatgtagaggctgaagcctctatggtcatt
gcagtgcctgagccttttggtggagctatcatcataggacaagaatccattacctaccac
aatggggataaatacctggcgatagccccaccgatcatcaagcaaagtacaatcgtgtgc
cacaaccgggttgatccaaatgggtctcgctaccttctgggggacatggaaggccgcctc
ttcatgctgctgttggaaaaagaggagctgatggatggtggcatcagcctgaaggacttg
cgtgtggaactgctcggagagacatccattgcagaatgtctgacttacctagacaatggg
gttgtgttcgttggctctcggctgggcgattcccaacttgtaaagctcaatgtggacagt
aatgaacaaggctcatacgtggtggccatggagacctttaccaacctcggccccatcgtg
gatatgtgcgtggtagatcttgagagacagggccaagggcagctggttacatgctccggt
gcctataaagagggttctctgaggatcatccggaatggaattggaattcatgaacatgcc
agcattgatcttccagggattaaaggattgtggcctctgagatcagattcccaccgtgaa
accgataacactttagtgctgtcctttgtgggccagaccagggttttgatgttgaatggg
gaggaagtagaagaaactgaactgacaggatttgtggatgatcaacaaactttcttctgt
ggcaatgtggcccatcagcaattaatccagatcacatctgcctcagtgcgcctcgtcagt
caggagcccaaggcccttgtcagcgagtggaaagaacccaatgggaagaacatcagcgtg
gcttcttgtaacagctgtcaggtggtggtggctgtggggagagtgctgtactatctagag
atccaccctcgggaactgaagcagataagttgcacagagatggaacatgaggtggcctgc
ctggacatcactcctttgggggacaccagtggcatgtcccctctgtgtgccattggcctc
tggactgacatttcagcccacattcttaagctgccctcatttgacctgctacacaaggag
atgttgggaggagagattattccacgatccattctgatgaccacctttgagagtagccat
taccttctgtgtgccctgggggatggggcactcttctattttgggctgaatattgagaca
ggtttgctgagtgaccgtaagaaagtaactttggggacccagcccactgttctaaggacg
tttcgttccctttccaccaccaatgtatttgcttgctctgaccgcccaactgtgatttac
agcagcaatcacaaactagttttctctaatgttaatcttaaggaggtgaactacatgtgt
cctctcaactcagatggatatcctgacagcctggctttggccaataacagcactttgaca
atcggcaccattgatgagattcagaagctgcatatccgcactgtccctctgtatgagtca
cccaggaaaatctgctatcaggaagtatctcagtgttttggagtgctctccagtcgcatt
gaagttcaggattccagcggaggtaccactgcactgaggcccagtgcaagcacccaggct
ctttccagcagtgtgagctccagcaagttattctcaagcagcacagctccacatgagaca
tcttttggtgaagaggtagaggtgcacaacctgctcattatagatcagcacacatttgaa
gtgcttcatgctcaccagtttctgcagaatgagtatgcactaagcctggtctcttgcaaa
ctgggtaaagatcccaacacttattttattgtgggcaccgccatggtttatcccgatgaa
gctgaacccaagcaaggccggattgtggtgtttcattattctgatggcaaattgcagagc
ttggctgagaaagaagtgaagggagctgtttattccatggtggaattcaatggaaaactt
ctagcgagcataaatagcacggtgcggctgtatgagtggacagcagagaaagagcttcgc
acagaatgcaatcattataacaatatcatggcactctacgtaaagacaaagggcgacttc
atcttagttggagatctgatgcgctctgtccttttgcttgcttacaagcccatggaaggc
aactttgaagagattgctcgagactttaatccaaattggatgagtgcggtagagattttg
gatgatgacaacttcctgggggcagagaatgcatttaacttgtttgtgtgtcagaaggac
agtgcggccacaactgatgaggaacgccagcatcttcaggagttggggctgttccatctg
ggcgagtttgtcaacgtcttttgtcatgggtccctggtcatgcagaatctgggtgaaaca
tccacaccaacacagggctcggtgctctttggcacagtcaatggaatgattggattggtg
acttcactgtcagaaagctggtataacctcctgcttgatcttcagaacagactcaataaa
gtcatcaaaagtgtgggaaaaattgaacattccttttggagatcatttcatacagaacgc
aagacagagctagccactgggttcattgatggagacttgattgaaagctttctagacatc
agtcgacccaaaatgcaggaggtggtggctaacttacagatcgatgacggcagtgggatg
aaaagggaggccacagtggatgatttgatcaagattgtggaggaactcacccgtatccac
tag
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integrated database retrieval system
