Sphaerodactylus townsendi (Townsend's least gecko): 125427839
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Entry
125427839 CDS
T08213
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125427839 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125427839 (XAB2)
03041 Spliceosome [BR:
stow03041
]
125427839 (XAB2)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125427839 (XAB2)
Spliceosome [BR:
stow03041
]
Complex B
Other components
Prp19-related factors
125427839 (XAB2)
Complex C
125427839 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
TPR_12
TPR_2
TPR_19
ARM_TT21
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
125427839
NCBI-ProteinID:
XP_048343351
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All DBs
Position
LG03:110201710..110209811
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AA seq
462 aa
AA seq
DB search
NWELLLGWTVLSLTLLSLLQARTIFEKASKVNFKQVDELASIWCEYGEMELRHENYDQAL
RILRKATAIPAKKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDL
RIATPQIIINYGLFLEEHNYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIDRYGGKKL
ERARDLFEQALDGCPQKYAKTIYLLYAKLEEEYGLARHAMAVYERATQAVQPSEQYDMYN
IYIKRAAEIYGVTHTRGIYEKAIEVLSDEHAREMCLRFADMESKLGEIDRARAVYSYCSQ
ICDPRTTSNFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVYSNAT
GTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPRVKEKILFVRSDASRSELAELSRQA
NPDEIDIDMDDDGNESEDNEPDEVQLEQQSVPSAVFGGLKDD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
aactgggagctccttctgggctggactgtcctttctcttaccttgctttccttgttgcag
gctcggaccatttttgaaaaagccagcaaggtgaatttcaagcaagtggacgagctggcc
agcatctggtgcgagtatggtgagatggagctacgacatgagaactatgaccaggcactg
cgcatccttcggaaagccacagccatcccagctaagaaggcagagtattttgattcctcc
gaacctgtgcagaatcgtgtatataagtccctcaaagtttggtccatgctggctgatctg
gaggaaagtctgggtaccttcaagtctactaaagctgtgtatgaccgcatcctggacctg
cgcattgccactcctcaaatcatcattaactatggtctcttcctggaagagcacaactac
tttgaggagagcttcaaggcatacgagagaggcatctccttgttcaaatggccaaatgtg
tatgacatttggaacacctacctaaccaagttcattgaccgctacggtggcaagaagctg
gaacgtgctcgggacctctttgaacaagcgctggatggctgtccccagaaatatgctaag
actatatacctgttgtacgctaagttggaggaagagtatggactagcacgtcatgccatg
gctgtgtatgagcgtgctactcaggctgtgcagccttcagagcagtatgatatgtacaac
atctacatcaagagggcagctgaaatctatggggtcacacacacccgtggcatctatgaa
aaagccattgaggttctgtctgatgagcatgcccgagagatgtgcctccgctttgccgac
atggagagcaagcttggtgagatagaccgagctcgtgcagtctactcctattgctcacaa
atatgtgatccccgaaccacttccaacttctggcaaacgtggaaagagttcgagatccgg
catgggaatgaagacaccataagagaaatgttgcgcattaaacgaagcgtgcaagccacc
tataatacccaagtcaactttatggcttcccagatgttgaaggtttatagcaatgctaca
gggactgtgtctgacttggcacctggccagagtggcatggatgacatgaagctgttggag
cagcgagcggagcagcttgcagctgaagcagagcgagatcagccccgagtgaaggagaag
atcctgtttgtcaggagtgatgcttcccgtagcgagctggccgaactttcccggcaggct
aaccctgatgagatagatattgacatggatgacgatggaaacgagagtgaggataacgag
cctgatgaggttcagctggagcagcagagtgtcccttctgctgtgtttggaggcctcaag
gatgactga
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